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Table 8 The distribution of variable genomic regions in Xcc strains

From: Comparative and functional genomics reveals genetic diversity and determinants of host specificity among reference strains and a large collection of Chinese isolates of the phytopathogen Xanthomonas campestris pv. campestris

 

Strains

XVR

33913

CN01

CN02

CN03

CN04

CN05

CN06

CN07

CN08

CN09

CN10

CN11

CN12

CN14

CN15

CN16

CN17

CN18

CN20

XVR01

+

-

-

-

-

-

-

+

-

-

-

-

-

-

-

-

-

-

+

XVR02

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

XVR03

+

-

-

-

-

+

-

+

-

-

-

-

-

+

+

+

-

-

-

XVR04

+

(-)

(-)

(-)

-

-

-

+

-

+

+

(-)

(-)

-

-

-

-

-

(-)

XVR05

+

-

-

-

-

+

-

+

-

+

+

-

-

-

-

-

-

-

(+)

XVR06

+

+

-

(+)

-

(+)

-

+

-

+

+

+

-

(+)

(+)

(+)

-

-

(+)

XVR07

+

-

-

-

-

-

-

(+)

-

+

+

-

-

-

-

-

-

-

(+)

XVR08

+

-

-

-

-

+

-

+

-

+

+

-

-

+

+

+

-

-

+

XVR09

+

-

-

-

-

+

-

+

-

+

+

-

-

-

-

-

-

-

+

XVR10

+

-

-

-

-

-

-

+

-

+

+

-

-

-

-

-

-

-

+

XVR11

+

-

-

-

-

+

-

+

-

+

+

-

-

-

-

-

-

-

+

XVR12

+

-

-

-

-

+

-

+

-

+

+

-

-

-

-

-

-

-

+

XVR13

(+)

+

-

+

-

(+)

-

(+)

-

(+)

(+)

+

-

-

-

-

-

-

(+)

XVR13.1

-

+

-

+

-

-

-

-

-

-

-

+

-

-

-

-

-

-

-

XVR14

+

-

-

-

-

+

-

+

-

-

-

+

-

-

-

-

-

-

+

XVR15

+

+

+

+

+

+

+

+

+

+

+

+

+

+

-

-

-

+

+

XVR16

+

+

-

+

-

+

-

+

-

+

+

+

-

+

+

+

-

-

+

XVR17

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

XVR18

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

XVR19

+

-

-

-

-

-

-

+

-

-

-

-

-

-

-

-

-

-

-

XVR20

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

XVR21

+

+

+

+

+

+

+

+

+

+

+

+

+

-

-

-

+

+

+

XVR22

-

+

+

-

+

-

-

+

+

+

+

+

+

-

+

+

+

+

+

XVR23

+

-

+

+

+

-

+

+

+

-

-

-

+

+

+

+

+

+

+

XVR24

+

+

-

-

-

+

-

+

-

+

+

+

-

-

-

-

-

-

+

XVR25

+

-

+

+

+

-

+

+

+

+

+

-

+

-

-

-

+

+

+

XVR26

+

+

-

+

-

+

-

+

-

-

-

+

-

-

-

-

-

-

+

XVR27

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

  1. +, the XVR is present; -, AHD; (+), some CDSs of the XVR might be present and are ordered in the allele in the given genome; (-), a few CDSs of the XVR are scattered in the allele in the given genome.