Skip to main content

Table 8 The distribution of variable genomic regions in Xcc strains

From: Comparative and functional genomics reveals genetic diversity and determinants of host specificity among reference strains and a large collection of Chinese isolates of the phytopathogen Xanthomonas campestris pv. campestris

  Strains
XVR 33913 CN01 CN02 CN03 CN04 CN05 CN06 CN07 CN08 CN09 CN10 CN11 CN12 CN14 CN15 CN16 CN17 CN18 CN20
XVR01 + - - - - - - + - - - - - - - - - - +
XVR02 + - - - - - - - - - - - - - - - - - -
XVR03 + - - - - + - + - - - - - + + + - - -
XVR04 + (-) (-) (-) - - - + - + + (-) (-) - - - - - (-)
XVR05 + - - - - + - + - + + - - - - - - - (+)
XVR06 + + - (+) - (+) - + - + + + - (+) (+) (+) - - (+)
XVR07 + - - - - - - (+) - + + - - - - - - - (+)
XVR08 + - - - - + - + - + + - - + + + - - +
XVR09 + - - - - + - + - + + - - - - - - - +
XVR10 + - - - - - - + - + + - - - - - - - +
XVR11 + - - - - + - + - + + - - - - - - - +
XVR12 + - - - - + - + - + + - - - - - - - +
XVR13 (+) + - + - (+) - (+) - (+) (+) + - - - - - - (+)
XVR13.1 - + - + - - - - - - - + - - - - - - -
XVR14 + - - - - + - + - - - + - - - - - - +
XVR15 + + + + + + + + + + + + + + - - - + +
XVR16 + + - + - + - + - + + + - + + + - - +
XVR17 - - - - - - - - - - - - - - - - - - -
XVR18 - - - - - - - - - - - - - - - - - - -
XVR19 + - - - - - - + - - - - - - - - - - -
XVR20 + - - - - - - - - - - - - - - - - - -
XVR21 + + + + + + + + + + + + + - - - + + +
XVR22 - + + - + - - + + + + + + - + + + + +
XVR23 + - + + + - + + + - - - + + + + + + +
XVR24 + + - - - + - + - + + + - - - - - - +
XVR25 + - + + + - + + + + + - + - - - + + +
XVR26 + + - + - + - + - - - + - - - - - - +
XVR27 + - - - - - - - - - - - - - - - - - -
  1. +, the XVR is present; -, AHD; (+), some CDSs of the XVR might be present and are ordered in the allele in the given genome; (-), a few CDSs of the XVR are scattered in the allele in the given genome.