Functional category | Annotated | Spotted | Conserved | AHD | Invalid | ADHs/spotted |
---|---|---|---|---|---|---|
C01 Amino acid biosynthesis | 115 | 115 | 97 | 16 | 2 | 13.91% |
C02 Biosynthesis of cofactors, prosthetic groups, carriers | 114 | 113 | 107 | 3 | 3 | 2.65% |
C03 Cell envelope and cell structure | 167 | 165 | 136 | 26 | 3 | 15.76% |
C04 Cellular processes | 127 | 127 | 110 | 16 | 1 | 12.60% |
C05 Central intermediary metabolism | 185 | 184 | 164 | 16 | 4 | 8.70% |
C06 Energy and carbon metabolism | 214 | 214 | 189 | 20 | 5 | 9.35% |
C07 Fatty acid and phospholipid metabolism | 80 | 80 | 74 | 4 | 2 | 5.00% |
C08 Nucleotide metabolism | 52 | 52 | 48 | 4 | 0 | 7.69% |
C09 Regulatory functions | 260 | 260 | 220 | 36 | 4 | 13.85% |
C10 Replication and DNA metabolism | 139 | 139 | 112 | 25 | 2 | 17.99% |
C11 Transport | 257 | 257 | 226 | 30 | 1 | 11.67% |
C12 Translation | 254 | 253 | 235 | 18 | 0 | 7.11% |
C13 Transcription | 53 | 53 | 45 | 8 | 0 | 15.09% |
C14 Mobile genetic elements | 138 | 65 | 10 | 53 | 2 | 81.54% |
C15 Putative pathogenicity factors | 305 | 304 | 258 | 46 | 0 | 15.13% |
   C15.01 Type I secretion system | 4 | 4 | 4 | 0 | 0 | 0.00% |
   C15.02 Type II secretion system | 24 | 24 | 22 | 2 | 0 | 8.33% |
   C15.03 Type III secretion system | 27 | 27 | 27 | 0 | 0 | 0.00% |
   C15.04 Type IV secretion system | 19 | 19 | 5 | 14 | 0 | 73.68% |
   C15.05 Type V secretion system | 4 | 4 | 4 | 0 | 0 | 0.00% |
   C15.06 Sec and TAT system | 19 | 19 | 18 | 1 | 0 | 5.26% |
   C15.07 Type III-effectors and candidates | 16 | 16 | 8 | 8 | 0 | 50.00% |
   C15.08 Host cell wall degrading enzymes | 34 | 33 | 32 | 1 | 0 | 3.03% |
   C15.09 Exopolysaccharides | 14 | 14 | 14 | 0 | 0 | 0.00% |
   C15.10 Lipopolysaccharides | 29 | 29 | 21 | 8 | 0 | 27.59% |
   C15.11 Detoxification | 44 | 44 | 43 | 1 | 0 | 2.27% |
   C15.12 Toxin and adhesin | 14 | 14 | 10 | 4 | 0 | 28.57% |
   C15.13 Quorum sensing | 26 | 26 | 25 | 1 | 0 | 3.85% |
   C15.14 Other pathogenicity factors | 31 | 31 | 25 | 6 | 0 | 19.35% |
C16 Stress adaptation | 102 | 102 | 92 | 10 | 0 | 9.80% |
C17 Undefined category | 130 | 130 | 101 | 27 | 2 | 20.77% |
C18 Hypothetical proteins | 1,581 | 1,573 | 1,181 | 372 | 20 | 23.65% |
Total | 4,273 | 4,186 | 3,405 | 730 | 51 | 17.44% |