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Table 5 Distribution of strain 8004's CDSs and the AHD CDSs by functional categories

From: Comparative and functional genomics reveals genetic diversity and determinants of host specificity among reference strains and a large collection of Chinese isolates of the phytopathogen Xanthomonas campestris pv. campestris

Functional category Annotated Spotted Conserved AHD Invalid ADHs/spotted
C01 Amino acid biosynthesis 115 115 97 16 2 13.91%
C02 Biosynthesis of cofactors, prosthetic groups, carriers 114 113 107 3 3 2.65%
C03 Cell envelope and cell structure 167 165 136 26 3 15.76%
C04 Cellular processes 127 127 110 16 1 12.60%
C05 Central intermediary metabolism 185 184 164 16 4 8.70%
C06 Energy and carbon metabolism 214 214 189 20 5 9.35%
C07 Fatty acid and phospholipid metabolism 80 80 74 4 2 5.00%
C08 Nucleotide metabolism 52 52 48 4 0 7.69%
C09 Regulatory functions 260 260 220 36 4 13.85%
C10 Replication and DNA metabolism 139 139 112 25 2 17.99%
C11 Transport 257 257 226 30 1 11.67%
C12 Translation 254 253 235 18 0 7.11%
C13 Transcription 53 53 45 8 0 15.09%
C14 Mobile genetic elements 138 65 10 53 2 81.54%
C15 Putative pathogenicity factors 305 304 258 46 0 15.13%
   C15.01 Type I secretion system 4 4 4 0 0 0.00%
   C15.02 Type II secretion system 24 24 22 2 0 8.33%
   C15.03 Type III secretion system 27 27 27 0 0 0.00%
   C15.04 Type IV secretion system 19 19 5 14 0 73.68%
   C15.05 Type V secretion system 4 4 4 0 0 0.00%
   C15.06 Sec and TAT system 19 19 18 1 0 5.26%
   C15.07 Type III-effectors and candidates 16 16 8 8 0 50.00%
   C15.08 Host cell wall degrading enzymes 34 33 32 1 0 3.03%
   C15.09 Exopolysaccharides 14 14 14 0 0 0.00%
   C15.10 Lipopolysaccharides 29 29 21 8 0 27.59%
   C15.11 Detoxification 44 44 43 1 0 2.27%
   C15.12 Toxin and adhesin 14 14 10 4 0 28.57%
   C15.13 Quorum sensing 26 26 25 1 0 3.85%
   C15.14 Other pathogenicity factors 31 31 25 6 0 19.35%
C16 Stress adaptation 102 102 92 10 0 9.80%
C17 Undefined category 130 130 101 27 2 20.77%
C18 Hypothetical proteins 1,581 1,573 1,181 372 20 23.65%
Total 4,273 4,186 3,405 730 51 17.44%