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Table 1 Putative secreted or cell surface signaling molecules that show significant enrichment in the VMP SAGE library

From: Transcriptional profiling of inductive mesenchyme to identify molecules involved in prostate development and disease

LONG-SAGE tag VMP VSU Uni-gene Description (SAGEMAP) Genomic BLAST
CATTTTCTGGCAAAATC 124 34 964 Insulin-like growth factor 2  
CCTAGCCCCTCCCACCA 49 15 7961 Rattus norvegicus similar to latent transforming growth factor-β binding protein 4S (LOC292734), mRNA  
ATATAATGAATAATAAT 38 13 14547 Delta-like homolog (Drosophila)  
GTTTGTACAATAAATAC 14 4 37338 Latent transforming growth factor-β binding protein 3  
GATGAATGTTATATGTT 12 2    Unique hit, 2 kb from mRIKEN cDNA1200009O22
TGAATCCTCTCCCTAAA 11 2 15332 R. norvegicus similar to RIKEN cDNA 9430096L06 (LOC291813), mRNA Unique hit, close to novel transcript (h Chemokine like superfamily factor 3)
TAAAGTCAAAATAAAAT 11 1 8257 R. norvegicus transcribed sequences Unique hit, 2 kb from Semaphorin6D locus
TGGGCATAGCTGAGGTG 10 2 41133 R. norvegicus transcribed sequences Unique hit, 2 kb from novel transcript with similarity to mSorC2 precursor (VPS10 domain containing receptor
TAAGAGCTCTTTCCATC 10 1 8672 R. norvegicus similar to hypothetical protein, estradiol-induced (LOC308843), mRNA Unique hit, ortholog of chicken Tsukushi
TCTGAATATAACATATC 8 1 22787 R. norvegicus similar to sprouty 1 (LOC294981), mRNA  
CCGCTTGAGACTCCTTC 6 0 25124 Rat insulin-like growth factor I mRNA, 3' end of mRNA  
GCATAGTCTGAGATGCA 6 0 40510 R. norvegicus transcribed sequences Unique hit, 2 kb from Wnt4 locus
TTCCTGACTAAATGTAG 6 0 65930 Notch gene homolog 2 (Drosophila)  
CCTTGGGGGAGGGTGGG 5 0    Unique hit, 1 kb from to mSlit2 homolog
GGAGATACCTGTTCAAA 5 0 11567 Nel-like 2 homolog (chicken)  
TAATTAAACACTTGTGA 5 0 103231 R. norvegicus transcribed sequences Unique hit, 4 kb from novel transcript with homology to mScube1
AGTGTGTACAAGCTTAG 5 0    Unique hit, close to novel transcript similar to mEphB3 receptor
  1. BLAST, basic local alignment search tool; kb, kilobases; SAGE, serial analysis of gene expression; VMP, ventral mesenchymal pad; VSU, VMP, smooth muscle and urethral epithelium.