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Table 5 H. glycines probesets orthologous to dauer-enriched C. elegans genes

From: Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines

H. glycines probeset

EST

Contig length

C. elegans gene

E-value, bit score, % identity (BLASTX*)

E-value, bit score, % identity (TBLASTN*)

Wormbase descriptor C. elegans gene

Cluster

InfJ2/parJ2

InfJ2/J3

J3/J4

HgAffx.11262.2.S1_at

1

610

R151.2a

2e-53, 199, 73%

6e-52, 197, 79%

Phosphoribosyl pyrophosphate synthetase

1

Up

Up

 

HgAffx.11331.1.A1_at

1

347

C25B8.3a

3e-26, 107, 85%

9e-25, 107, 85%

Peptidase C1A, papain

2

Down

Down

 

HgAffx.11103.1.S1_at

3

745

C25B8.3a

4e-53, 184, 70%

4e-52, 184, 70%

Peptidase C1A, papain

2

Down

Down

 

HgAffx.11103.1.A1_at

3

745

C25B8.3a

4e-53, 184, 70%

4e-52, 184, 70%

Peptidase C1A, papain

2

   

HgAffx.11744.1.S1_at

4

656

Y17G7B.17

1e-19, 87, 32%

2e-17, 83, 35%

Proliferation-related protein MLF

1

   

HgAffx.13580.1.S1_at

2

650

C10C6.5

1e-61, 226, 53%

1e-65, 244, 56%

ABC transporter

2

   

HgAffx.15051.1.S1_at

16

807

F11G11.1

2e-41, 159, 42%

9e-41, 159, 42%

Collagen helix repeat

3

 

Down

 

HgAffx.15051.2.S1_at

6

882

F11G11.2

2e-40, 157, 41%

2e-39, 155, 41%

Glutathione S-transferase

4

 

Down

 

HgAffx.15228.1.S1_at

4

1,067

C46F4.2

e-143, 498, 67%

e-134, 473, 63%

AMP-dependent synthetase and ligase

5

Down

Down

 

HgAffx.15789.1.S1_at

5

1,217

C46F4.2

5e-40, 155, 36%

6e-39, 155, 36%

AMP-dependent synthetase and ligase

2

Down

Down

 

HgAffx.15789.2.S1_at

3

755

C46F4.2

2e-96, 342, 65%

3e-95, 342, 65%

AMP-dependent synthetase and ligase

2

Down

Down

 

HgAffx.15812.1.S1_at

2

475

C51E3.6

1e-20, 90, 50%

7e-23, 102, 54%

Xanthine/uracil/vitamin C permease

2

   

HgAffx.15725.1.S1_at

1

476

M110.5b

7e-56, 206, 63%

2e-51, 196, 62%

Pleckstrin homology-type

2

Down

  

HgAffx.16156.1.S1_at

2

477

C53D6.7

7e-43, 163, 43%

4e-40, 158, 46%

Concanavalin A-like lectin/glucanase

2

   

HgAffx.16267.1.S1_at

1

291

F11G11.2

3e-22, 94, 52%

6e-21, 94, 52%

Glutathione S-transferase

6

Up

Up

 

HgAffx.17077.1.S1_at

8

1,012

B0361.9

5e-43, 165, 56%

9e-40, 156, 63%

N/apple PAN

3

Up

Up

 

HgAffx.16890.1.S1_at

2

465

K07A3.2a

1e-23, 99, 47%

6e-22, 99, 47%

Sterol-sensing 5TM box

3

Up

Up

 

HgAffx.16917.1.S1_at

2

616

F09G2.3

2e-29, 113, 54%

4e-28, 113, 54%

Phosphate transporter

5

Down

Down

 

HgAffx.17264.1.S1_at

19

1,233

T03E6.7

7e-93, 331, 57%

3e-92, 331, 57%

Peptidase C1A, papain

3

Up

Up

 

HgAffx.17605.1.S1_at

2

636

Y9C9A.16

6e-47, 177, 41%

7e-46, 177, 41%

FAD-dep. pyridine oxidoreductase

1

 

Down

 

HgAffx.17530.1.S1_at

2

474

K08H10.4

6e-19, 84, 50%

1e-17, 84, 50%

Alpha-isopropylmalate synthase

2

Down

  

HgAffx.17668.1.S1_at

1

481

K07C5.5

6e-32, 127, 44%

1e-30, 127, 44%

Epoxide hydrolase

2

Down

Down

 

HgAffx.17855.1.S1_at

6

601

R13A5.3

6e-24, 101, 38%

2e-23, 101, 38%

Transthyretin-like

2

   

HgAffx.18208.1.S1_at

7

803

K07C11.5

3e-21, 92, 32%

7e-20, 89, 33%

Netrin

5

Down

Down

 

HgAffx.18170.1.S1_at

1

479

F39B3.2

2e-24, 102, 61%

9e-31, 127, 47%

Rhodopsin-like GPCR superfamily

5

Down

Down

 

HgAffx.18607.1.S1_at

9

991

R11F4.1

e-126, 442, 67%

e-125, 442, 67%

Carbohydrate kinase

2

 

Up

Up

HgAffx.18847.1.S1_at

1

485

Y54G11A.5

8e-70, 251, 81%

2e-69, 251, 81%

Catalase

3

 

Up

 

HgAffx.19435.1.S1_at

4

668

Y44F5A.1

2e-33, 133, 38%

1e-30, 127, 37%

WD-40 repeat

1

Down

Down

 

HgAffx.19602.1.S1_at

1

340

C11E4.1

3e-34, 134, 67%

3e-33, 134, 67%

Glutathione peroxidase

7

Up

Up

 

HgAffx.19847.1.S1_at

6

679

W01A11.6

5e-31, 125, 45%

2e-30, 125, 45%

Molybdenum biosynthesis protein

6

Up

Up

 

HgAffx.19874.1.S1_at

1

484

R160.7

7e-36, 140, 58%

2e-34, 140, 58%

FYVE zinc finger

2

Down

  

HgAffx.19903.1.S1_at

9

630

F45H10.4

4e-28, 115, 42%

2e-27, 155, 42%

Unnamed protein

2

Down

  

HgAffx.20463.1.S1_at

1

395

F40E10.3

2e-40, 154, 55%

1e-59, 233, 76%

Calsequestrin

5

Down

Down

 

HgAffx.20251.1.S1_at

1

395

C37C3.8b

7e-35, 136, 70%

5e-25, 108, 55%

Unnamed protein

6

Up

  

HgAffx.20740.1.S1_at

4

574

T28B4.3

4e-31, 125, 50%

4e-22, 97, 40%

Transthyretin-like

5

 

Down

 

HgAffx.20171.1.S1_at

2

885

T19B10.3

2e-58, 216, 39%

1e-58, 221, 40%

Glycoside hydrolase

2

Down

  

HgAffx.20528.1.S1_at

2

653

K09C8.3

2e-28, 116, 33%

2e-19, 90, 31%

Peptidase M

3

 

Up

 

HgAffx.20171.1.A1_at

2

885

T19B10.3

2e-58, 216, 39%

1e-58, 221, 40%

Glycoside hydrolase

2

   

HgAffx.20464.1.S1_at

2

395

E02C12.4

2e-26, 108, 49%

6e-26, 109, 49%

Transthyretin-like

5

Down

Down

 

HgAffx.20474.1.S1_at

5

695

C46F4.2

1e-23, 85, 55%

1e-17, 85, 55%

AMP-dependent synthetase and ligase

5

   

HgAffx.20842.1.S1_at

15

1,556

C14F11.5

2e-54, 204, 67%

3e-76, 278, 62%

Heat shock protein Hsp20

3

 

Down

 

HgAffx.21213.1.S1_at

7

1,329

C10C6.5

4e-32, 129, 36%

4e-31, 129, 36%

ABC transporter

7

Up

  

HgAffx.22102.1.S1_at

2

556

CC4.2

3e-18, 82, 49%

3e-18, 84, 49%

Neuropeptide-like protein, nlp-15

5

 

Down

Down

HgAffx.22266.1.S1_at

3

435

C37H5.3a

3e-33, 131, 47%

9e-32, 131, 47%

Alpha/beta hydrolase

1

Down

Down

 

HgAffx.22554.1.S1_at

5

1,194

H24K24.5

e-109, 387, 48%

e-101, 363, 45%

Dimethylaniline monooxygenase

3

Up

Up

 

HgAffx.22270.1.S1_s_at

2

395

T05A7.1

2e-20, 89, 32%

2e-19, 89, 32%

Unnamed protein

5

Down

Down

 

HgAffx.22723.1.S1_at

1

425

F21F3.1

2e-28, 115, 50%

5e-27, 115, 50%

Peptidyl-glycine monooxygenase

5

Down

Down

Down

HgAffx.22678.1.S1_at

11

707

K07E1.1

8e-61, 224, 61%

2e-59, 222, 63%

Acireductone dioxygenase

3

Up

  

HgAffx.22868.1.S1_at

17

1,373

T03E6.7

e-120, 423, 62%

e-120, 423, 62%

Peptidase C1A, papain

2

   

HgAffx.22801.1.S1_at

6

813

H10D18.2

1e-30, 124, 39%

1e-29, 122, 38%

Allergen V5/Tpx-1 related

5

Down

Down

 

HgAffx.22840.1.S1_at

7

513

T10C6.14

8e-41, 157, 98%

8e-42, 161, 98%

Histone H4

5

 

Down

 

HgAffx.22840.2.S1_at

6

501

T10C6.14

1e-41, 159, 97%

4e-41, 159, 97%

Histone H4

5

 

Down

 

HgAffx.22798.1.S1_at

27

680

JC8.8

3e-43, 165, 58%

8e-43, 165, 58%

Transthyretin-like

1

Down

Down

 

HgAffx.22879.1.S1_at

2

454

C11E4.2

7e-38, 85, 71%

7e-37, 85, 71%

Glutathione peroxidase

7

Up

  

HgAffx.22709.1.S1_at

8

1,065

C28H8.6a

8e-85, 304, 58%

3e-84, 304, 58%

LIM, zinc-binding

5

Down

Down

 

HgAffx.23565.1.S1_at

7

549

C11E4.1

1e-57, 213, 62%

1e-56, 212, 63%

Glutathione peroxidase

5

Down

Down

 

HgAffx.23446.1.S1_at

5

876

F07D3.2

2e-19, 87, 51%

6e-18, 83, 38%

FMRFamide-related peptide

5

 

Down

Down

HgAffx.23377.1.S1_at

1

485

C33A12.7

7e-46, 173, 57%

7e-45, 173, 57%

Metallo-beta-lactamase superfamily

1

Down

Down

 

HgAffx.24026.1.S1_at

5

541

T07C4.5

2e-23, 99, 46%

6e-23, 99, 46%

Transthyretin-like

5

Down

Down

 

HgAffx.24221.1.S1_at

2

662

H14N18.3

3e-21, 92, 38%

3e-20, 90, 39%

Casein

1

Down

Down

 

HgAffx.250.1.S1_at

7

908

F32A5.4a

3e-35, 139, 34%

4e-34, 137, 39%

Proteinase inhibitor I33, aspin

1

Down

  

HgAffx.2812.1.S1_at

3

500

R11A8.4

2e-24, 102, 42%

2e-22, 100, 49%

Silent information regulator protein 2

2

Down

Down

 

HgAffx.2812.1.A1_at

3

500

R11A8.4

2e-24, 102, 42%

2e-22, 100, 49%

Silent information regulator protein 2

1

   

HgAffx.24343.1.S1_at

8

657

B0334.1

5e-28, 115, 46%

6e-31, 126, 49%

Transthyretin-like

7

   

HgAffx.2920.1.S1_at

3

578

T10C6.14

3e-19, 85, 52%

1e-21, 94, 53%

Histone H4

3

Up

Up

 

HgAffx.2920.1.A1_at

3

578

T10C6.14

3e-19, 85, 52%

1e-21, 94, 53%

Histone H4

3

 

Up

 

HgAffx.2888.1.S1_at

2

473

T25B9.7

7e-25, 103, 35%

2e-23, 103, 35%

UDP-glucuronosyl/glucosyltransferase

3

 

Down

 

HgAffx.2888.1.A1_at

2

473

T25B9.7

7e-25, 103, 35%

2e-23, 103, 35%

UDP-glucuronosyl/glucosyltransferase

4

 

Down

 

HgAffx.4596.1.S1_at

1

573

C54D10.10

1e-18, 84, 43%

7e-18, 84, 43%

Proteinase inhibitor I2

3

Up

Up

 

HgAffx.4485.1.S1_at

1

623

ZK945.1

5e-45, 171, 45%

8e-44, 171, 45%

Penicillin-binding protein

3

Up

Up

 

HgAffx.5769.1.S1_at

1

620

K10B3.6a

2e-20, 89, 32%

5e-19, 89, 32%

Phosphodiesterase

3

   

HgAffx.6540.1.S1_at

2

655

ZK945.1

4e-57, 211, 58%

5e-56, 211, 58%

Penicillin-binding protein

3

Up

Up

 

HgAffx.8976.1.S1_at

2

694

T24D8.5

6e-18, 81, 70%

2e-17, 81, 70%

Neuropeptide-like protein, nlp-2

5

Down

Down

 

HgAffx.9380.1.S1_at

2

756

Y54G11A.5

2e-84, 302, 60%

9e-86, 310, 62%

Catalase

1

   
  1. *BLASTX of H. glycines nucleotide probesets against C. elegans proteins and TBLASTN of C. elegans proteins against H. glycines nucleotide probesets. Differential expression (FDR 5%) where indicated and direction of expression change relative to infective J2. Full-length sequence.