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Table 1 Scaffolds from the current Anopheles gambiae genome golden path

From: Update of the Anopheles gambiaePEST genome assembly

No. Scaffold accession number Full length of scaffold* Scaffold begin Scaffold end Assembly status to the next scaffold BAC clones crossing gap between current and next scaffold
  X chromosome Telomere end     
1 AAAB01008846 11308833 4C 1D Not joined  
2 AAAB01008847 3715079 1D 5A Not joined  
3 AAAB01008963 2230633 5A 5C Not joined  
4 AAAB01008811 3062431 5C 6 Not joined  
5 AAAB01008973 600295 6 6 Not joined  
6 AAAB01008958 589940 6 6 Not joined  
7 AAAB01008852 409660 6 6 Not joined  
8 AAAB01008975 935344 6 6 Not joined  
9 AAAB01008885 267815 6 6 Not joined  
10 AAAB01008967 438965 6 6 Not joined  
11 AAAB01007622 14705 6 6 Not joined  
12 AAAB01008976 589797 6 6 Not joined  
13 AAAB01008861 109611 6 6 Not joined  
  X chromosome Centromere end     
  2R chromosome Telomere end     
14 AAAB01008987 16222597 10D 7A Bridged 17O20
15 AAAB01008799 2774677 11B 10D Not joined  
16 AAAB01008859 12516315 13E 11B Bridged 122O11
17 AAAB01008879 2921310 14A 14C Joined  
18 AAAB01008794 932688 14D 14D Joined  
19 AAAB01008982 1015562 14D 14E Joined and bridged 155O10
20 AAAB01008904 1759265 14E 15B Joined  
21 AAAB01008851 2082253 15C 15C Joined and bridged 179J17
22 AAAB01008820 590116 15D 15C Joined and bridged 30L16
23 AAAB01008888 3396474 15D 16A Not joined  
24 AAAB01008844 2866027 16B 16D Joined and bridged 21H06
25 AAAB01008805 646796 16D 16D Not joined  
26 AAAB01008862 212521 16D 16D Not joined  
27 AAAB01008978 1934381 16D 17B Bridged 124P12
28 AAAB01008817 1590424 17C 17C Bridged 16N20, 105N12
29 AAAB01008880 4233641 18A 18C Not joined  
30 AAAB01008898 4120773 18C 19C Bridged 105P15
31 AAAB01008952 1118246 19D 19C Not joined  
32 AAAB01008961 516376 19D 19D Bridged 174H20, 127O12
33 AAAB01008850 840256 19D 19D Bridged 07F16
34 AAAB01008977 457753 19D 19D Not joined  
35 AAAB01008949 335163 19E 19E Not joined  
36 AAAB01008897 259841 19E 19E Not joined  
  2R chromosome Centromere end     
  2L chromosome Centromere end     
37 AAAB01008942 373146 20A 20A Not joined  
38 AAAB01008026 124951 20A 20A Not joined  
39 AAAB01008864 318965 20B 20B Not joined  
40 AAAB01008968 3184012 20D 20B Bridged 01I16, 01J12
41 AAAB01008905 1027887 20D 20D Not joined  
42 AAAB01008948 3345744 21A 21B Not joined  
43 AAAB01008456 41134 21B 21B Not joined  
44 AAAB01008827 28099 21B 21B Not joined  
45 AAAB01008900 4906461 21C 21F Not joined  
46 AAAB01008810 494023 21F 22A Not joined  
47 AAAB01008960 23099915 22A 25D Not joined  
48 AAAB01008807 12309988 28D 25D Not joined  
  2Lchromosome Telomere end     
  3R chromosome Telomere end     
49 AAAB01008964 12399987 30E 29A Joined  
50 AAAB01008944 6709423 30E 31D Joined  
51 AAAB01008984 12483120 32A 33D Joined and bridged 11E04
52 AAAB01008835 1771096 33D 34A Joined  
53 AAAB01008797 1002333 34A 34B Not joined  
54 AAAB01008839 2408169 34C 34B Joined and bridged 08B11
55 AAAB01008980 16417966 34C 37D Not joined  
56 AAAB01008822 56627 37D 37D Not joined  
57 AAAB01008971 377729 37D 37D Not joined  
58 AAAB01008943 173243 37D 37D Not joined  
  3R chromosome Centromere end     
  3L chromosome Centromere end     
59 AAAB01008981 219224 38A 38A Not joined  
60 AAAB01008985 236235 38A 38A Not joined  
61 AAAB01008972 744379 38A 38A Not joined  
62 AAAB01008957 222192 38A 38A Not joined  
63 AAAB01008849 2994010 38C 38B Not joined  
64 AAAB01008906 127247 38C 38C Not joined  
65 AAAB01008795 347814 38C 38C Not joined  
66 AAAB01008933 2255294 38C 39B Not joined  
67 AAAB01008838 221210 39A 39A Not joined  
68 AAAB01008796 270581 39B 39B Bridged 22E23, 119N12
69 AAAB01008848 1927899 39B 39C Joined and bridged 133F8, 12F24
70 AAAB01008979 1577277 40A 39C Joined  
71 AAAB01008951 359421 40A 40A Joined and bridged 02H06
72 AAAB01008823 3392972 41A 40B Joined and bridged 04P06, 10C06, 08F18
73 AAAB01008793 402616 41A 41A Joined and bridged 160H13
74 AAAB01008804 907607 41B 41A Joined  
75 AAAB01008816 6058108 42B 41B Not joined  
76 AAAB01008966 3863510 43B 42C Joined  
77 AAAB01008956 1048260 43B 43B Joined and bridged 128N23
78 AAAB01008090 381451 43B 43B Joined and bridged 131N20, 143K17, 23C10
79 AAAB01008834 2541584 43D 43B Bridged 12N18, 08K01, 102F22, 172A24, 19C24, 23K03
80 AAAB01008986 12698247 46D 43D Not joined  
  3L chromosome Telomere end     
  1. *This represents the original scaffold lengths. When adjacent scaffolds overlap, part of one of the scaffolds was designated as an alternative assembly and excluded from the chromosome assembly (see Additional data file 6). The 28 scaffolds shown in bold have been newly mapped or oriented.