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Table 7 Comparison of gene prediction sets with spliced EST alignments

From: Creating a honey bee consensus gene set

  GLEAN Drosophila Ortholog Ensembl Evolutionary Conserved Core Fgenesh NCBI
Unique predicted donor/acceptor sites 54,818 21,254 101,054 49,587 80,889 61,107
Internal EST donor/acceptor sites 3,255 1,467 3,157 2,504 3,227 3,233
Perfect matches to EST donor/acceptor site 2,985 1,354 2,861 2,094 2,812 2,857
Perfect matches per internal EST donor/acceptor site 0.92 0.92 0.91 0.84 0.87 0.88
Perfect matches per predicted donor/acceptor site 0.059 0.069 0.031 0.042 0.035 0.047
Donor match 3,083 1,369 2,909 2,230 3,071 3,008
Acceptor match 3,063 1,392 2,932 2,219 3,030 2,940
  1. 'Predicted donor/acceptor sites' are splice sites within predicted gene models. 'Internal EST donor/acceptor sites' are EST splice sites located between start and termination codons of predicted genes. EST, expressed sequence tag.