TY - JOUR AU - Kappler, J. W. AU - Roehm, N. AU - Marrack, P. PY - 1987 DA - 1987// TI - T cell tolerance by clonal elimination in the thymus. JO - Cell VL - 49 UR - https://doi.org/10.1016/0092-8674(87)90568-X DO - 10.1016/0092-8674(87)90568-X ID - Kappler1987 ER - TY - JOUR AU - Starr, T. K. AU - Jameson, S. C. AU - Hogquist, K. A. PY - 2003 DA - 2003// TI - Positive and negative selection of T cells. JO - Annu Rev Immunol VL - 21 UR - https://doi.org/10.1146/annurev.immunol.21.120601.141107 DO - 10.1146/annurev.immunol.21.120601.141107 ID - Starr2003 ER - TY - JOUR AU - Anderson, M. S. AU - Venanzi, E. S. AU - Klein, L. AU - Chen, Z. AU - Berzins, S. AU - Turley, S. J. AU - Von Boehmer, H. AU - Bronson, R. AU - Dierich, A. AU - Benoist, C. AU - Mathis, D. PY - 2002 DA - 2002// TI - Projection of an immunological self shadow within the thymus by the aire protein. JO - Science VL - 298 UR - https://doi.org/10.1126/science.1075958 DO - 10.1126/science.1075958 ID - Anderson2002 ER - TY - JOUR AU - Liston, A. AU - Gray, D. H. AU - Lesage, S. AU - Fletcher, A. L. AU - Wilson, J. AU - Webster, K. E. AU - Scott, H. S. AU - Boyd, R. L. AU - Peltonen, L. AU - Goodnow, C. C. PY - 2004 DA - 2004// TI - Gene dosage-limiting role of Aire in thymic expression, clonal deletion and organ-specific autoimmunity. JO - J Exp Med VL - 200 UR - https://doi.org/10.1084/jem.20040581 DO - 10.1084/jem.20040581 ID - Liston2004 ER - TY - JOUR AU - Liston, A. AU - Lesage, S. AU - Wilson, J. AU - Peltonen, L. AU - Goodnow, C. C. PY - 2003 DA - 2003// TI - Aire regulates negative selection of organ-specific T cells. JO - Nat Immunol VL - 4 UR - https://doi.org/10.1038/ni906 DO - 10.1038/ni906 ID - Liston2003 ER - TY - JOUR AU - Todd, J. A. AU - Wicker, L. S. PY - 2001 DA - 2001// TI - Genetic protection from the inflammatory disease type 1 diabetes in humans and animal models. JO - Immunity VL - 15 UR - https://doi.org/10.1016/S1074-7613(01)00202-3 DO - 10.1016/S1074-7613(01)00202-3 ID - Todd2001 ER - TY - JOUR AU - Kishimoto, H. AU - Sprent, J. PY - 2001 DA - 2001// TI - A defect in central tolerance in NOD mice. JO - Nat Immunol VL - 2 UR - https://doi.org/10.1038/ni726 DO - 10.1038/ni726 ID - Kishimoto2001 ER - TY - JOUR AU - Lesage, S. AU - Hartley, S. B. AU - Akkaraju, S. AU - Wilson, J. AU - Townsend, M. AU - Goodnow, C. C. PY - 2002 DA - 2002// TI - Failure to censor forbidden clone of CD4 T cells in autoimmune diabetes. JO - J Exp Med VL - 196 UR - https://doi.org/10.1084/jem.20020735 DO - 10.1084/jem.20020735 ID - Lesage2002 ER - TY - JOUR AU - Choisy-Rossi, C. M. AU - Holl, T. M. AU - Pierce, M. A. AU - Chapman, H. D. AU - Serreze, D. V. PY - 2004 DA - 2004// TI - Enhanced pathogenicity of diabetogenic T cells escaping a non-MHC gene-controlled near death experience. JO - J Immunol VL - 173 UR - https://doi.org/10.4049/jimmunol.173.6.3791 DO - 10.4049/jimmunol.173.6.3791 ID - Choisy-Rossi2004 ER - TY - JOUR AU - Liston, A. AU - Lesage, S. AU - Gray, D. H. AU - O'Reilly, L. A. AU - Strasser, A. AU - Fahrer, A. M. AU - Boyd, R. L. AU - Wilson, J. AU - Baxter, A. G. AU - Gallo, E. M. PY - 2004 DA - 2004// TI - Generalised resistance to thymic deletion in the NOD mouse: a polygenic trait characterized by defective induction of Bim. JO - Immunity VL - 21 ID - Liston2004 ER - TY - JOUR AU - Zucchelli, S. AU - Holler, P. AU - Yamagata, T. AU - Roy, M. AU - Benoist, C. AU - Mathis, D. PY - 2005 DA - 2005// TI - Defective central tolerance induction in NOD mice: genomics and genetics. JO - Immunity VL - 22 UR - https://doi.org/10.1016/j.immuni.2005.01.015 DO - 10.1016/j.immuni.2005.01.015 ID - Zucchelli2005 ER - TY - JOUR AU - Eaves, I. A. AU - Wicker, L. S. AU - Ghandour, G. AU - Lyons, P. A. AU - Peterson, L. B. AU - Todd, J. A. AU - Glynne, R. J. PY - 2002 DA - 2002// TI - Combining mouse congenic strains and microarray gene expression analyses to study a complex trait: the NOD model of type 1 diabetes. JO - Genome Res VL - 12 UR - https://doi.org/10.1101/gr.214102. Article published online before print in January 2002 DO - 10.1101/gr.214102. Article published online before print in January 2002 ID - Eaves2002 ER - TY - JOUR AU - DeRyckere, D. AU - Mann, D. L. AU - DeGregori, J. PY - 2003 DA - 2003// TI - Characterization of transcriptional regulation during negative selection in vivo. JO - J Immunol VL - 171 UR - https://doi.org/10.4049/jimmunol.171.2.802 DO - 10.4049/jimmunol.171.2.802 ID - DeRyckere2003 ER - TY - JOUR AU - Schmitz, I. AU - Clayton, L. K. AU - Reinherz, E. L. PY - 2003 DA - 2003// TI - Gene expression analysis of thymocyte selection in vivo. JO - Int Immunol VL - 15 UR - https://doi.org/10.1093/intimm/dxg125 DO - 10.1093/intimm/dxg125 ID - Schmitz2003 ER - TY - JOUR AU - Martin, S. AU - Bevan, M. J. PY - 1997 DA - 1997// TI - Antigen-specific and nonspecific deletion of immature cortical thymocytes caused by antigen injection. JO - Eur J Immunol VL - 27 UR - https://doi.org/10.1002/eji.1830271037 DO - 10.1002/eji.1830271037 ID - Martin1997 ER - TY - JOUR AU - McClintick, J. N. AU - Edenberg, H. J. PY - 2006 DA - 2006// TI - Effects of filtering by Present call on analysis of microarray experiments. JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-49 DO - 10.1186/1471-2105-7-49 ID - McClintick2006 ER - TY - JOUR AU - Choe, S. E. AU - Boutros, M. AU - Michelson, A. M. AU - Church, G. M. AU - Halfon, M. S. PY - 2005 DA - 2005// TI - Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. JO - Genome Biol VL - 6 UR - https://doi.org/10.1186/gb-2005-6-2-r16 DO - 10.1186/gb-2005-6-2-r16 ID - Choe2005 ER - TY - JOUR AU - Seo, J. AU - Hoffman, E. P. PY - 2006 DA - 2006// TI - Probe set algorithms: is there a rational best bet? JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-395 DO - 10.1186/1471-2105-7-395 ID - Seo2006 ER - TY - JOUR AU - Qin, L. X. AU - Beyer, R. P. AU - Hudson, F. N. AU - Linford, N. J. AU - Morris, D. E. AU - Kerr, K. F. PY - 2006 DA - 2006// TI - Evaluation of methods for oligonucleotide array data via quantitative real-time PCR. JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-23 DO - 10.1186/1471-2105-7-23 ID - Qin2006 ER - TY - STD TI - Gene expression omnibus. [http://www.ncbi.nlm.nih.gov/geo/] UR - http://www.ncbi.nlm.nih.gov/geo/ ID - ref20 ER - TY - JOUR AU - Quackenbush, J. PY - 2001 DA - 2001// TI - Computational analysis of microarray data. JO - Nat Rev Genet VL - 2 UR - https://doi.org/10.1038/35076576 DO - 10.1038/35076576 ID - Quackenbush2001 ER - TY - JOUR AU - Mitchell, T. C. AU - Hildeman, D. AU - Kedl, R. M. AU - Teague, T. K. AU - Schaefer, B. C. AU - White, J. AU - Zhu, Y. AU - Kappler, J. AU - Marrack, P. PY - 2001 DA - 2001// TI - Immunological adjuvants promote activated T cell survival via induction of Bcl-3. JO - Nat Immunol VL - 2 UR - https://doi.org/10.1038/35073104 DO - 10.1038/35073104 ID - Mitchell2001 ER - TY - JOUR AU - Muljo, S. A. AU - Ansel, K. M. AU - Kanellopoulou, C. AU - Livingston, D. M. AU - Rao, A. AU - Rajewsky, K. PY - 2005 DA - 2005// TI - Aberrant T cell differentiation in the absence of Dicer. JO - J Exp Med VL - 202 UR - https://doi.org/10.1084/jem.20050678 DO - 10.1084/jem.20050678 ID - Muljo2005 ER - TY - JOUR AU - Chen, F. AU - Chen, D. AU - Rothenberg, E. V. PY - 1999 DA - 1999// TI - Specific regulation of fos family transcription factors in thymocytes at two developmental checkpoints. JO - Int Immunol VL - 11 UR - https://doi.org/10.1093/intimm/11.5.677 DO - 10.1093/intimm/11.5.677 ID - Chen1999 ER - TY - JOUR AU - Matsuyama, T. AU - Kimura, T. AU - Kitagawa, M. AU - Pfeffer, K. AU - Kawakami, T. AU - Watanabe, N. AU - Kundig, T. M. AU - Amakawa, R. AU - Kishihara, K. AU - Wakeham, A. PY - 1993 DA - 1993// TI - Targeted disruption of IRF-1 or IRF-2 results in abnormal type-I IFN gene induction and aberrant lymphocyte development. JO - Cell VL - 75 UR - https://doi.org/10.1016/S0092-8674(05)80086-8 DO - 10.1016/S0092-8674(05)80086-8 ID - Matsuyama1993 ER - TY - JOUR AU - Tabrizifard, S. AU - Olaru, A. AU - Plotkin, J. AU - Fallahi-Sichani, M. AU - Livak, F. AU - Petrie, H. T. PY - 2004 DA - 2004// TI - Analysis of transcription factor expression during discrete stages of postnatal thymocyte differentiation. JO - J Immunol VL - 173 UR - https://doi.org/10.4049/jimmunol.173.2.1094 DO - 10.4049/jimmunol.173.2.1094 ID - Tabrizifard2004 ER - TY - JOUR AU - Hartenstein, B. AU - Teurich, S. AU - Hess, J. AU - Schenkel, J. AU - Schorpp-Kistner, M. AU - Angel, P. PY - 2002 DA - 2002// TI - Th2 cell-specific cytokine expression and allergen-induced airway inflammation depend on JunB. JO - EMBO J VL - 21 UR - https://doi.org/10.1093/emboj/cdf648 DO - 10.1093/emboj/cdf648 ID - Hartenstein2002 ER - TY - JOUR AU - Huang, Y. H. AU - Li, D. AU - Winoto, A. AU - Robey, E. A. PY - 2004 DA - 2004// TI - Distinct transcriptional programs in thymocytes responding to T cell receptor, Notch, and positive selection signals. JO - Proc Natl Acad Sci USA VL - 101 UR - https://doi.org/10.1073/pnas.0401133101 DO - 10.1073/pnas.0401133101 ID - Huang2004 ER - TY - JOUR AU - Trama, J. AU - Go, W. Y. AU - Ho, S. N. PY - 2002 DA - 2002// TI - The osmoprotective function of the NFAT5 transcription factor in T cell development and activation. JO - J Immunol VL - 169 UR - https://doi.org/10.4049/jimmunol.169.10.5477 DO - 10.4049/jimmunol.169.10.5477 ID - Trama2002 ER - TY - JOUR AU - Carrillo-Vico, A. AU - Garcia-Perganeda, A. AU - Naji, L. AU - Calvo, J. R. AU - Romero, M. P. AU - Guerrero, J. M. PY - 2003 DA - 2003// TI - Expression of membrane and nuclear melatonin receptor mRNA and protein in the mouse immune system. JO - Cell Mol Life Sci VL - 60 UR - https://doi.org/10.1007/s00018-003-3207-4 DO - 10.1007/s00018-003-3207-4 ID - Carrillo-Vico2003 ER - TY - JOUR AU - Yu, Q. AU - Park, J. H. AU - Doan, L. L. AU - Erman, B. AU - Feigenbaum, L. AU - Singer, A. PY - 2006 DA - 2006// TI - Cytokine signal transduction is suppressed in preselection double-positive thymocytes and restored by positive selection. JO - J Exp Med VL - 203 UR - https://doi.org/10.1084/jem.20051836 DO - 10.1084/jem.20051836 ID - Yu2006 ER - TY - JOUR AU - Winrow, C. J. AU - Pankratz, D. G. AU - Vibat, C. R. AU - Bowen, T. J. AU - Callahan, M. A. AU - Warren, A. J. AU - Hilbush, B. S. AU - Wynshaw-Boris, A. AU - Hasel, K. W. AU - Weaver, Z. PY - 2005 DA - 2005// TI - Aberrant recombination involving the granzyme locus occurs in Atm-/- T-cell lymphomas. JO - Hum Mol Genet VL - 14 UR - https://doi.org/10.1093/hmg/ddi301 DO - 10.1093/hmg/ddi301 ID - Winrow2005 ER - TY - JOUR AU - Niederberger, N. AU - Buehler, L. K. AU - Ampudia, J. AU - Gascoigne, N. R. PY - 2005 DA - 2005// TI - Thymocyte stimulation by anti-TCR-beta, but not by anti-TCR-alpha, leads to induction of developmental transcription program. JO - J Leukocyte Biol VL - 77 UR - https://doi.org/10.1189/jlb.1004608 DO - 10.1189/jlb.1004608 ID - Niederberger2005 ER - TY - JOUR AU - Simarro, M. AU - Lanyi, A. AU - Howie, D. AU - Poy, F. AU - Bruggeman, J. AU - Choi, M. AU - Sumegi, J. AU - Eck, M. J. AU - Terhorst, C. PY - 2004 DA - 2004// TI - SAP increases FynT kinase activity and is required for phosphorylation of SLAM and Ly9. JO - Int Immunol VL - 16 UR - https://doi.org/10.1093/intimm/dxh074 DO - 10.1093/intimm/dxh074 ID - Simarro2004 ER - TY - JOUR AU - Opferman, J. T. AU - Letai, A. AU - Beard, C. AU - Sorcinelli, M. D. AU - Ong, C. C. AU - Korsmeyer, S. J. PY - 2003 DA - 2003// TI - Development and maintenance of B and T lymphocytes requires antiapoptotic MCL-1. JO - Nature VL - 426 UR - https://doi.org/10.1038/nature02067 DO - 10.1038/nature02067 ID - Opferman2003 ER - TY - JOUR AU - Kappes, D. J. AU - He, X. AU - He, X. PY - 2005 DA - 2005// TI - CD4-CD8 lineage commitment: an inside view. JO - Nat Immunol VL - 6 UR - https://doi.org/10.1038/ni1230 DO - 10.1038/ni1230 ID - Kappes2005 ER - TY - JOUR AU - Kinashi, T. AU - Katagiri, K. PY - 2005 DA - 2005// TI - Regulation of immune cell adhesion and migration by regulator of adhesion and cell polarization enriched in lymphoid tissues. JO - Immunology VL - 116 UR - https://doi.org/10.1111/j.1365-2567.2005.02214.x DO - 10.1111/j.1365-2567.2005.02214.x ID - Kinashi2005 ER - TY - JOUR AU - Wang, J. AU - Vock, V. M. AU - Li, S. AU - Olivas, O. R. AU - Wilkinson, M. F. PY - 2002 DA - 2002// TI - A quality control pathway that down-regulates aberrant T-cell receptor (TCR) transcripts by a mechanism requiring UPF2 and translation. JO - J Biol Chem VL - 277 UR - https://doi.org/10.1074/jbc.M111781200 DO - 10.1074/jbc.M111781200 ID - Wang2002 ER - TY - JOUR AU - Winandy, S. AU - Wu, L. AU - Wang, J. H. AU - Georgopoulos, K. PY - 1999 DA - 1999// TI - Pre-T cell receptor (TCR) and TCR-controlled checkpoints in T cell differentiation are set by Ikaros. JO - J Exp Med VL - 190 UR - https://doi.org/10.1084/jem.190.8.1039 DO - 10.1084/jem.190.8.1039 ID - Winandy1999 ER - TY - JOUR AU - Arsenovic-Ranin, N. AU - Vucevic, D. AU - Okada, N. AU - Dimitrijevic, M. AU - Colic, M. PY - 2000 DA - 2000// TI - A monoclonal antibody to the rat Crry/p65 antigen, a complement regulatory membrane protein, stimulates adhesion and proliferation of thymocytes. JO - Immunology VL - 100 UR - https://doi.org/10.1046/j.1365-2567.2000.00043.x DO - 10.1046/j.1365-2567.2000.00043.x ID - Arsenovic-Ranin2000 ER - TY - JOUR AU - Fontenot, J. D. AU - Rasmussen, J. P. AU - Gavin, M. A. AU - Rudensky, A. Y. PY - 2005 DA - 2005// TI - A function for interleukin 2 in Foxp3-expressing regulatory T cells. JO - Nat Immunol VL - 6 UR - https://doi.org/10.1038/ni1263 DO - 10.1038/ni1263 ID - Fontenot2005 ER - TY - JOUR AU - Lee, C. K. AU - Gimeno, R. AU - Levy, D. E. PY - 1999 DA - 1999// TI - Differential regulation of constitutive major histocompatibility complex class I expression in T and B lymphocytes. JO - J Exp Med VL - 190 UR - https://doi.org/10.1084/jem.190.10.1451 DO - 10.1084/jem.190.10.1451 ID - Lee1999 ER - TY - JOUR AU - Mick, V. E. AU - Starr, T. K. AU - McCaughtry, T. M. AU - McNeil, L. K. AU - Hogquist, K. A. PY - 2004 DA - 2004// TI - The regulated expression of a diverse set of genes during thymocyte positive selection in vivo. JO - J Immunol VL - 173 UR - https://doi.org/10.4049/jimmunol.173.9.5434 DO - 10.4049/jimmunol.173.9.5434 ID - Mick2004 ER - TY - JOUR AU - Uckun, F. M. AU - Tuel-Ahlgren, L. AU - Obuz, V. AU - Smith, R. AU - Dibirdik, I. AU - Hanson, M. AU - Langlie, M. C. AU - Ledbetter, J. A. PY - 1991 DA - 1991// TI - Interleukin 7 receptor engagement stimulates tyrosine phosphorylation, inositol phospholipid turnover, proliferation, and selective differentiation to the CD4 lineage by human fetal thymocytes. JO - Proc Natl Acad Sci USA VL - 88 UR - https://doi.org/10.1073/pnas.88.14.6323 DO - 10.1073/pnas.88.14.6323 ID - Uckun1991 ER - TY - JOUR AU - Josien, R. AU - Wong, B. R. AU - Li, H. L. AU - Steinman, R. M. AU - Choi, Y. PY - 1999 DA - 1999// TI - TRANCE, a TNF family member, is differentially expressed on T cell subsets and induces cytokine production in dendritic cells. JO - J Immunol VL - 162 ID - Josien1999 ER - TY - JOUR AU - Al-Shami, A. AU - Spolski, R. AU - Kelly, J. AU - Fry, T. AU - Schwartzberg, P. L. AU - Pandey, A. AU - Mackall, C. L. AU - Leonard, W. J. PY - 2004 DA - 2004// TI - A role for thymic stromal lymphopoietin in CD4(+) T cell development. JO - J Exp Med VL - 200 UR - https://doi.org/10.1084/jem.20031975 DO - 10.1084/jem.20031975 ID - Al-Shami2004 ER - TY - JOUR AU - Leenders, H. AU - Whiffield, S. AU - Benoist, C. AU - Mathis, D. PY - 2000 DA - 2000// TI - Role of the forkhead transcription family member, FKHR, in thymocyte differentiation. JO - Eur J Immunol VL - 30 UR - https://doi.org/3.0.CO;2-9 DO - 3.0.CO;2-9 ID - Leenders2000 ER - TY - JOUR AU - Sun, G. AU - Liu, X. AU - Mercado, P. AU - Jenkinson, S. R. AU - Kypriotou, M. AU - Feigenbaum, L. AU - Galera, P. AU - Bosselut, R. PY - 2005 DA - 2005// TI - The zinc finger protein cKrox directs CD4 lineage differentiation during intrathymic T cell positive selection. JO - Nat Immunol VL - 6 UR - https://doi.org/10.1038/ni1183 DO - 10.1038/ni1183 ID - Sun2005 ER - TY - JOUR AU - Yamada, M. AU - Ishii, N. AU - Asao, H. AU - Murata, K. AU - Kanazawa, C. AU - Sasaki, H. AU - Sugamura, K. PY - 2002 DA - 2002// TI - Signal-transducing adaptor molecules STAM1 and STAM2 are required for T-cell development and survival. JO - Mol Cell Biol VL - 22 UR - https://doi.org/10.1128/MCB.22.24.8648-8658.2002 DO - 10.1128/MCB.22.24.8648-8658.2002 ID - Yamada2002 ER - TY - JOUR AU - Betz, U. A. AU - Muller, W. PY - 1998 DA - 1998// TI - Regulated expression of gp130 and IL-6 receptor alpha chain in T cell maturation and activation. JO - Int Immunol VL - 10 UR - https://doi.org/10.1093/intimm/10.8.1175 DO - 10.1093/intimm/10.8.1175 ID - Betz1998 ER - TY - JOUR AU - Puthier, D. AU - Joly, F. AU - Irla, M. AU - Saade, M. AU - Victorero, G. AU - Loriod, B. AU - Nguyen, C. PY - 2004 DA - 2004// TI - A general survey of thymocyte differentiation by transcriptional analysis of knockout mouse models. JO - J Immunol VL - 173 UR - https://doi.org/10.4049/jimmunol.173.10.6109 DO - 10.4049/jimmunol.173.10.6109 ID - Puthier2004 ER - TY - JOUR AU - Hurst, L. D. AU - Pal, C. AU - Lercher, M. J. PY - 2004 DA - 2004// TI - The evolutionary dynamics of eukaryotic gene order. JO - Nat Rev Genet VL - 5 UR - https://doi.org/10.1038/nrg1319 DO - 10.1038/nrg1319 ID - Hurst2004 ER - TY - JOUR AU - Zhao, Y. AU - Tan, J. AU - Zhuang, L. AU - Jiang, X. AU - Liu, E. T. AU - Yu, Q. PY - 2005 DA - 2005// TI - Inhibitors of histone deacetylases target the Rb-E2F1 pathway for apoptosis induction through activation of proapoptotic protein Bim. JO - Proc Natl Acad Sci USA VL - 102 UR - https://doi.org/10.1073/pnas.0505585102 DO - 10.1073/pnas.0505585102 ID - Zhao2005 ER - TY - JOUR AU - Salojin, K. AU - Zhang, J. AU - Cameron, M. AU - Gill, B. AU - Arreaza, G. AU - Ochi, A. AU - Delovitch, T. L. PY - 1997 DA - 1997// TI - Impaired plasma membrane targeting of Grb2-murine son of sevenless (mSOS) complex and differential activation of the Fyn-T cell receptor (TCR)-zeta-Cbl pathway mediate T cell hyporesponsiveness in autoimmune nonobese diabetic mice. JO - J Exp Med VL - 186 UR - https://doi.org/10.1084/jem.186.6.887 DO - 10.1084/jem.186.6.887 ID - Salojin1997 ER - TY - JOUR AU - Ueda, H. AU - Howson, J. M. AU - Esposito, L. AU - Heward, J. AU - Snook, H. AU - Chamberlain, G. AU - Rainbow, D. B. AU - Hunter, K. M. AU - Smith, A. N. AU - Di Genova, G. PY - 2003 DA - 2003// TI - Association of the T-cell regulatory gene CTLA4 with susceptibility to autoimmune disease. JO - Nature VL - 423 UR - https://doi.org/10.1038/nature01621 DO - 10.1038/nature01621 ID - Ueda2003 ER - TY - JOUR AU - Hamilton-Williams, E. E. AU - Serreze, D. V. AU - Charlton, B. AU - Johnson, E. A. AU - Marron, M. P. AU - Mullbacher, A. AU - Slattery, R. M. PY - 2001 DA - 2001// TI - Transgenic rescue implicates beta2-microglobulin as a diabetes susceptibility gene in nonobese diabetic (NOD) mice. JO - Proc Natl Acad Sci USA VL - 98 UR - https://doi.org/10.1073/pnas.191383798 DO - 10.1073/pnas.191383798 ID - Hamilton-Williams2001 ER - TY - JOUR AU - Ray, R. AU - Chen, G. AU - Vande Velde, C. AU - Cizeau, J. AU - Park, J. H. AU - Reed, J. C. AU - Gietz, R. D. AU - Greenberg, A. H. PY - 2000 DA - 2000// TI - BNIP3 heterodimerizes with Bcl-2/Bcl-X(L) and induces cell death independent of a Bcl-2 homology 3 (BH3) domain at both mitochondrial and nonmitochondrial sites. JO - J Biol Chem VL - 275 UR - https://doi.org/10.1074/jbc.275.2.1439 DO - 10.1074/jbc.275.2.1439 ID - Ray2000 ER - TY - JOUR AU - Imazu, T. AU - Shimizu, S. AU - Tagami, S. AU - Matsushima, M. AU - Nakamura, Y. AU - Miki, T. AU - Okuyama, A. AU - Tsujimoto, Y. PY - 1999 DA - 1999// TI - Bcl-2/E1B 19 kDa-interacting protein 3-like protein (Bnip3L) interacts with bcl-2/Bcl-xL and induces apoptosis by altering mitochondrial membrane permeability. JO - Oncogene VL - 18 UR - https://doi.org/10.1038/sj.onc.1202722 DO - 10.1038/sj.onc.1202722 ID - Imazu1999 ER - TY - JOUR AU - Lamy, L. AU - Ticchioni, M. AU - Rouquette-Jazdanian, A. K. AU - Samson, M. AU - Deckert, M. AU - Greenberg, A. H. AU - Bernard, A. PY - 2003 DA - 2003// TI - CD47 and the 19 kDa interacting protein-3 (BNIP3) in T cell apoptosis. JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.M301869200 DO - 10.1074/jbc.M301869200 ID - Lamy2003 ER - TY - JOUR AU - Yook, Y. H. AU - Kang, K. H. AU - Maeng, O. AU - Kim, T. R. AU - Lee, J. O. AU - Kang, K. I. AU - Kim, Y. S. AU - Paik, S. G. AU - Lee, H. PY - 2004 DA - 2004// TI - Nitric oxide induces BNIP3 expression that causes cell death in macrophages. JO - Biochem Biophys Res Commun VL - 321 UR - https://doi.org/10.1016/j.bbrc.2004.06.144 DO - 10.1016/j.bbrc.2004.06.144 ID - Yook2004 ER - TY - JOUR AU - Guo, K. AU - Searfoss, G. AU - Krolikowski, D. AU - Pagnoni, M. AU - Franks, C. AU - Clark, K. AU - Yu, K. T. AU - Jaye, M. AU - Ivashchenko, Y. PY - 2001 DA - 2001// TI - Hypoxia induces the expression of the pro-apoptotic gene BNIP3. JO - Cell Death Differ VL - 8 UR - https://doi.org/10.1038/sj.cdd.4400810 DO - 10.1038/sj.cdd.4400810 ID - Guo2001 ER - TY - JOUR AU - Wan, J. AU - Martinvalet, D. AU - Ji, X. AU - Lois, C. AU - Kaech, S. M. AU - Von Andrian, U. H. AU - Lieberman, J. AU - Ahmed, R. AU - Manjunath, N. PY - 2003 DA - 2003// TI - The Bcl-2 family pro-apoptotic molecule, BNIP3 regulates activation-induced cell death of effector cytotoxic T lymphocytes. JO - Immunology VL - 110 UR - https://doi.org/10.1046/j.1365-2567.2003.01710.x DO - 10.1046/j.1365-2567.2003.01710.x ID - Wan2003 ER - TY - JOUR AU - Giatromanolaki, A. AU - Koukourakis, M. I. AU - Sowter, H. M. AU - Sivridis, E. AU - Gibson, S. AU - Gatter, K. C. AU - Harris, A. L. PY - 2004 DA - 2004// TI - BNIP3 expression is linked with hypoxia-regulated protein expression and with poor prognosis in non-small cell lung cancer. JO - Clin Cancer Res VL - 10 UR - https://doi.org/10.1158/1078-0432.CCR-04-0076 DO - 10.1158/1078-0432.CCR-04-0076 ID - Giatromanolaki2004 ER - TY - JOUR AU - Reymond, A. AU - Meroni, G. AU - Fantozzi, A. AU - Merla, G. AU - Cairo, S. AU - Luzi, L. AU - Riganelli, D. AU - Zanaria, E. AU - Messali, S. AU - Cainarca, S. PY - 2001 DA - 2001// TI - The tripartite motif family identifies cell compartments. JO - EMBO J VL - 20 UR - https://doi.org/10.1093/emboj/20.9.2140 DO - 10.1093/emboj/20.9.2140 ID - Reymond2001 ER - TY - JOUR AU - Yamanouchi, S. AU - Kuwahara, K. AU - Sakata, A. AU - Ezaki, T. AU - Matsuoka, S. AU - Miyazaki, J. AU - Hirose, S. AU - Tamura, T. AU - Nariuchi, H. AU - Sakaguchi, N. PY - 1998 DA - 1998// TI - A T cell activation antigen, Ly6C, induced on CD4+ Th1 cells mediates an inhibitory signal for secretion of IL-2 and proliferation in peripheral immune responses. JO - Eur J Immunol VL - 28 UR - https://doi.org/3.0.CO;2-N DO - 3.0.CO;2-N ID - Yamanouchi1998 ER - TY - JOUR AU - Jaakkola, I. AU - Merinen, M. AU - Jalkanen, S. AU - Hanninen, A. PY - 2003 DA - 2003// TI - Ly6C induces clustering of LFA-1 (CD11a/CD18) and is involved in subtype-specific adhesion of CD8 T cells. JO - J Immunol VL - 170 UR - https://doi.org/10.4049/jimmunol.170.3.1283 DO - 10.4049/jimmunol.170.3.1283 ID - Jaakkola2003 ER - TY - JOUR AU - Cervelli, M. AU - Polticelli, F. AU - Federico, R. AU - Mariottini, P. PY - 2003 DA - 2003// TI - Heterologous expression and characterization of mouse spermine oxidase. JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.M207888200 DO - 10.1074/jbc.M207888200 ID - Cervelli2003 ER - TY - JOUR AU - Xu, H. AU - Chaturvedi, R. AU - Cheng, Y. AU - Bussiere, F. I. AU - Asim, M. AU - Yao, M. D. AU - Potosky, D. AU - Meltzer, S. J. AU - Rhee, J. G. AU - Kim, S. S. PY - 2004 DA - 2004// TI - Spermine oxidation induced by Helicobacter pyloriresults in apoptosis and DNA damage: implications for gastric carcinogenesis. JO - Cancer Res VL - 64 UR - https://doi.org/10.1158/0008-5472.CAN-04-3511 DO - 10.1158/0008-5472.CAN-04-3511 ID - Xu2004 ER - TY - JOUR AU - Wang, Y. AU - Hacker, A. AU - Murray-Stewart, T. AU - Fleischer, J. G. AU - Woster, P. M. AU - Casero, R. A. PY - 2005 DA - 2005// TI - Induction of human spermine oxidase SMO(PAOh1) is regulated at the levels of new mRNA synthesis, mRNA stabilization, and newly synthesized protein. JO - Biochem J VL - 386 UR - https://doi.org/10.1042/BJ20041084 DO - 10.1042/BJ20041084 ID - Wang2005 ER - TY - JOUR AU - Bouillet, P. AU - Metcalf, D. AU - Huang, D. C. AU - Tarlinton, D. M. AU - Kay, T. W. AU - Kontgen, F. AU - Adams, J. M. AU - Strasser, A. PY - 1999 DA - 1999// TI - Proapoptotic Bcl-2 relative Bim required for certain apoptotic responses, leukocyte homeostasis, and to preclude autoimmunity. JO - Science VL - 286 UR - https://doi.org/10.1126/science.286.5445.1735 DO - 10.1126/science.286.5445.1735 ID - Bouillet1999 ER - TY - JOUR AU - Bouillet, P. AU - Purton, J. F. AU - Godfrey, D. I. AU - Zhang, L. C. AU - Coultas, L. AU - Puthalakath, H. AU - Pellegrini, M. AU - Cory, S. AU - Adams, J. M. AU - Strasser, A. PY - 2002 DA - 2002// TI - BH3-only Bcl-2 family member Bim is required for apoptosis of autoreactive thymocytes. JO - Nature VL - 415 UR - https://doi.org/10.1038/415922a DO - 10.1038/415922a ID - Bouillet2002 ER - TY - JOUR AU - Qi, Z. AU - Sun, X. H. PY - 2004 DA - 2004// TI - Hyperresponse to T-cell receptor signaling and apoptosis of Id1 transgenic thymocytes. JO - Mol Cell Biol VL - 24 UR - https://doi.org/10.1128/MCB.24.17.7313-7323.2004 DO - 10.1128/MCB.24.17.7313-7323.2004 ID - Qi2004 ER - TY - JOUR AU - Celli, C. M. AU - Jaiswal, A. K. PY - 2003 DA - 2003// TI - Role of GRP58 in mitomycin C-induced DNA cross-linking. JO - Cancer Res VL - 63 ID - Celli2003 ER - TY - JOUR AU - Luo, X. AU - Huang, Y. AU - Sheikh, M. S. PY - 2003 DA - 2003// TI - Cloning and characterization of a novel gene PDRG that is differentially regulated by p53 and ultraviolet radiation. JO - Oncogene VL - 22 UR - https://doi.org/10.1038/sj.onc.1207010 DO - 10.1038/sj.onc.1207010 ID - Luo2003 ER - TY - JOUR AU - Bergman, M. L. AU - Cilio, C. M. AU - Penha-Goncalves, C. AU - Lamhamedi-Cherradi, S. E. AU - Lofgren, A. AU - Colucci, F. AU - Lejon, K. AU - Garchon, H. J. AU - Holmberg, D. PY - 2001 DA - 2001// TI - CTLA-4-/- mice display T cell-apoptosis resistance resembling that ascribed to autoimmune-prone non-obese diabetic (NOD) mice. JO - J Autoimmun VL - 16 UR - https://doi.org/10.1006/jaut.2000.0474 DO - 10.1006/jaut.2000.0474 ID - Bergman2001 ER - TY - JOUR AU - Vijayakrishnan, L. AU - Slavik, J. M. AU - Illes, Z. AU - Greenwald, R. J. AU - Rainbow, D. AU - Greve, B. AU - Peterson, L. B. AU - Hafler, D. A. AU - Freeman, G. J. AU - Sharpe, A. H. PY - 2004 DA - 2004// TI - An autoimmune disease-associated CTLA-4 splice variant lacking the B7 binding domain signals negatively in T cells. JO - Immunity VL - 20 UR - https://doi.org/10.1016/S1074-7613(04)00110-4 DO - 10.1016/S1074-7613(04)00110-4 ID - Vijayakrishnan2004 ER - TY - JOUR AU - Freeman, G. J. AU - Long, A. J. AU - Iwai, Y. AU - Bourque, K. AU - Chernova, T. AU - Nishimura, H. AU - Fitz, L. J. AU - Malenkovich, N. AU - Okazaki, T. AU - Byrne, M. C. PY - 2000 DA - 2000// TI - Engagement of the PD-1 immunoinhibitory receptor by a novel B7 family member leads to negative regulation of lymphocyte activation. JO - J Exp Med VL - 192 UR - https://doi.org/10.1084/jem.192.7.1027 DO - 10.1084/jem.192.7.1027 ID - Freeman2000 ER - TY - JOUR AU - Nishimura, H. AU - Honjo, T. AU - Minato, N. PY - 2000 DA - 2000// TI - Facilitation of beta selection and modification of positive selection in the thymus of PD-1-deficient mice. JO - J Exp Med VL - 191 UR - https://doi.org/10.1084/jem.191.5.891 DO - 10.1084/jem.191.5.891 ID - Nishimura2000 ER - TY - JOUR AU - Nishimura, H. AU - Nose, M. AU - Hiai, H. AU - Minato, N. AU - Honjo, T. PY - 1999 DA - 1999// TI - Development of lupus-like autoimmune diseases by disruption of the PD-1 gene encoding an ITIM motif-carrying immunoreceptor. JO - Immunity VL - 11 UR - https://doi.org/10.1016/S1074-7613(00)80089-8 DO - 10.1016/S1074-7613(00)80089-8 ID - Nishimura1999 ER - TY - JOUR AU - Nishimura, H. AU - Okazaki, T. AU - Tanaka, Y. AU - Nakatani, K. AU - Hara, M. AU - Matsumori, A. AU - Sasayama, S. AU - Mizoguchi, A. AU - Hiai, H. AU - Minato, N. AU - Honjo, T. PY - 2001 DA - 2001// TI - Autoimmune dilated cardiomyopathy in PD-1 receptor-deficient mice. JO - Science VL - 291 UR - https://doi.org/10.1126/science.291.5502.319 DO - 10.1126/science.291.5502.319 ID - Nishimura2001 ER - TY - JOUR AU - Ansari, M. J. AU - Salama, A. D. AU - Chitnis, T. AU - Smith, R. N. AU - Yagita, H. AU - Akiba, H. AU - Yamazaki, T. AU - Azuma, M. AU - Iwai, H. AU - Khoury, S. J. PY - 2003 DA - 2003// TI - The programmed death-1 (PD-1) pathway regulates autoimmune diabetes in nonobese diabetic (NOD) mice. JO - J Exp Med VL - 198 UR - https://doi.org/10.1084/jem.20022125 DO - 10.1084/jem.20022125 ID - Ansari2003 ER - TY - JOUR AU - Nagashima, T. AU - Silva, D. G. AU - Petrovsky, N. AU - Socha, L. A. AU - Suzuki, H. AU - Saito, R. AU - Kasukawa, T. AU - Kurochkin, I. V. AU - Konagaya, A. AU - Schonbach, C. PY - 2003 DA - 2003// TI - Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS. JO - Genome Res VL - 13 UR - https://doi.org/10.1101/gr.1019903 DO - 10.1101/gr.1019903 ID - Nagashima2003 ER - TY - JOUR AU - Call, D. R. AU - Borucki, M. K. AU - Besser, T. E. PY - 2003 DA - 2003// TI - Mixed-genome microarrays reveal multiple serotype and lineage-specific differences among strains of Listeria monocytogenes. JO - J Clin Microbiol VL - 41 UR - https://doi.org/10.1128/JCM.41.2.632-639.2003 DO - 10.1128/JCM.41.2.632-639.2003 ID - Call2003 ER - TY - JOUR AU - Sawa, T. AU - Ohno-Machado, L. PY - 2003 DA - 2003// TI - A neural network-based similarity index for clustering DNA microarray data. JO - Comput Biol Med VL - 33 UR - https://doi.org/10.1016/S0010-4825(02)00032-X DO - 10.1016/S0010-4825(02)00032-X ID - Sawa2003 ER - TY - JOUR AU - Subramanian, A. AU - Tamayo, P. AU - Mootha, V. K. AU - Mukherjee, S. AU - Ebert, B. L. AU - Gillette, M. A. AU - Paulovich, A. AU - Pomeroy, S. L. AU - Golub, T. R. AU - Lander, E. S. AU - Mesirov, J. P. PY - 2005 DA - 2005// TI - Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. JO - Proc Natl Acad Sci USA VL - 102 UR - https://doi.org/10.1073/pnas.0506580102 DO - 10.1073/pnas.0506580102 ID - Subramanian2005 ER - TY - JOUR AU - Van Parijs, L. AU - Peterson, D. A. AU - Abbas, A. K. PY - 1998 DA - 1998// TI - The Fas/Fas ligand pathway and Bcl-2 regulate T cell responses to model self and foreign antigens. JO - Immunity VL - 8 UR - https://doi.org/10.1016/S1074-7613(00)80478-1 DO - 10.1016/S1074-7613(00)80478-1 ID - Van Parijs1998 ER - TY - JOUR AU - Borggrefe, T. AU - Wabl, M. AU - Akhmedov, A. T. AU - Jessberger, R. PY - 1998 DA - 1998// TI - A B-cell-specific DNA recombination complex. JO - J Biol Chem VL - 273 UR - https://doi.org/10.1074/jbc.273.27.17025 DO - 10.1074/jbc.273.27.17025 ID - Borggrefe1998 ER - TY - JOUR AU - Shinohara, M. AU - Terada, Y. AU - Iwamatsu, A. AU - Shinohara, A. AU - Mochizuki, N. AU - Higuchi, M. AU - Gotoh, Y. AU - Ihara, S. AU - Nagata, S. AU - Itoh, H. PY - 2002 DA - 2002// TI - SWAP-70 is a guanine-nucleotide-exchange factor that mediates signaling of membrane ruffling. JO - Nature VL - 416 UR - https://doi.org/10.1038/416759a DO - 10.1038/416759a ID - Shinohara2002 ER - TY - JOUR AU - Janoueix-Lerosey, I. AU - Jollivet, F. AU - Camonis, J. AU - Marche, P. N. AU - Goud, B. PY - 1995 DA - 1995// TI - Two-hybrid system screen with the small GTP-binding protein Rab6. Identification of a novel mouse GDP dissociation inhibitor isoform and two other potential partners of Rab6. JO - J Biol Chem VL - 270 UR - https://doi.org/10.1074/jbc.270.24.14801 DO - 10.1074/jbc.270.24.14801 ID - Janoueix-Lerosey1995 ER - TY - JOUR AU - Lorenzi, M. V. AU - Horii, Y. AU - Yamanaka, R. AU - Sakaguchi, K. AU - Miki, T. PY - 1996 DA - 1996// TI - FRAG1, a gene that potently activates fibroblast growth factor receptor by C-terminal fusion through chromosomal rearrangement. JO - Proc Natl Acad Sci USA VL - 93 UR - https://doi.org/10.1073/pnas.93.17.8956 DO - 10.1073/pnas.93.17.8956 ID - Lorenzi1996 ER - TY - JOUR AU - Volkert, M. R. AU - Elliott, N. A. AU - Housman, D. E. PY - 2000 DA - 2000// TI - Functional genomics reveals a family of eukaryotic oxidation protection genes. JO - Proc Natl Acad Sci USA VL - 97 UR - https://doi.org/10.1073/pnas.260495897 DO - 10.1073/pnas.260495897 ID - Volkert2000 ER - TY - JOUR AU - Trappe, R. AU - Ahmed, M. AU - Glaser, B. AU - Vogel, C. AU - Tascou, S. AU - Burfeind, P. AU - Engel, W. PY - 2002 DA - 2002// TI - Identification and characterization of a novel murine multigene family containing a PHD-finger-like motif. JO - Biochem Biophys Res Commun VL - 293 UR - https://doi.org/10.1016/S0006-291X(02)00277-2 DO - 10.1016/S0006-291X(02)00277-2 ID - Trappe2002 ER - TY - JOUR AU - Fujino, T. AU - Kondo, J. AU - Ishikawa, M. AU - Morikawa, K. AU - Yamamoto, T. T. PY - 2001 DA - 2001// TI - Acetyl-CoA synthetase 2, a mitochondrial matrix enzyme involved in the oxidation of acetate. JO - J Biol Chem VL - 276 UR - https://doi.org/10.1074/jbc.M008782200 DO - 10.1074/jbc.M008782200 ID - Fujino2001 ER - TY - JOUR AU - Salvatore, P. AU - Hanash, C. R. AU - Kido, Y. AU - Imai, Y. AU - Accili, D. PY - 1998 DA - 1998// TI - Identification of sirm, a novel insulin-regulated SH3 binding protein that associates with Grb-2 and FYN. JO - J Biol Chem VL - 273 UR - https://doi.org/10.1074/jbc.273.12.6989 DO - 10.1074/jbc.273.12.6989 ID - Salvatore1998 ER - TY - JOUR AU - Caplan, S. AU - Hartnell, L. M. AU - Aguilar, R. C. AU - Naslavsky, N. AU - Bonifacino, J. S. PY - 2001 DA - 2001// TI - Human Vam6p promotes lysosome clustering and fusion in vivo. JO - J Cell Biol VL - 154 UR - https://doi.org/10.1083/jcb.200102142 DO - 10.1083/jcb.200102142 ID - Caplan2001 ER - TY - JOUR AU - Mbikay, M. AU - Seidah, N. G. AU - Chretien, M. PY - 2001 DA - 2001// TI - Neuroendocrine secretory protein 7B2: structure, expression and functions. JO - Biochem J VL - 357 UR - https://doi.org/10.1042/bj3570329 DO - 10.1042/bj3570329 ID - Mbikay2001 ER - TY - JOUR AU - Ozawa, M. AU - Muramatsu, T. PY - 1993 DA - 1993// TI - Reticulocalbin, a novel endoplasmic reticulum resident Ca(2+)-binding protein with multiple EF-hand motifs and a carboxyl-terminal HDEL sequence. JO - J Biol Chem VL - 268 ID - Ozawa1993 ER - TY - JOUR AU - Lagaudriere-Gesbert, C. AU - Newmyer, S. L. AU - Gregers, T. F. AU - Bakke, O. AU - Ploegh, H. L. PY - 2002 DA - 2002// TI - Uncoating ATPase Hsc70 is recruited by invariant chain and controls the size of endocytic compartments. JO - Proc Natl Acad Sci USA VL - 99 UR - https://doi.org/10.1073/pnas.042688099 DO - 10.1073/pnas.042688099 ID - Lagaudriere-Gesbert2002 ER - TY - JOUR AU - Diehl, J. A. AU - Yang, W. AU - Rimerman, R. A. AU - Xiao, H. AU - Emili, A. PY - 2003 DA - 2003// TI - Hsc70 regulates accumulation of cyclin D1 and cyclin D1-dependent protein kinase. JO - Mol Cell Biol VL - 23 UR - https://doi.org/10.1128/MCB.23.5.1764-1774.2003 DO - 10.1128/MCB.23.5.1764-1774.2003 ID - Diehl2003 ER - TY - JOUR AU - Miyazawa, H. AU - Izumi, M. AU - Tada, S. AU - Takada, R. AU - Masutani, M. AU - Ui, M. AU - Hanaoka, F. PY - 1993 DA - 1993// TI - Molecular cloning of the cDNAs for the four subunits of mouse DNA polymerase alpha-primase complex and their gene expression during cell proliferation and the cell cycle. JO - J Biol Chem VL - 268 ID - Miyazawa1993 ER - TY - JOUR AU - Zerbe, L. K. AU - Kuchta, R. D. PY - 2002 DA - 2002// TI - The p58 subunit of human DNA primase is important for primer initiation, elongation, and counting. JO - Biochemistry VL - 41 UR - https://doi.org/10.1021/bi016030b DO - 10.1021/bi016030b ID - Zerbe2002 ER -