Table 3 Results of incorporating additional features into GeneZilla evaluated on RefSeq genes
From: JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions
| Â | Nuc | Exon | Gene |
|---|---|---|---|
polyA | -1% | +1% | +2% |
TATA+CAP | +0% | +0% | +1% |
TATA (no CAP) | +0% | +0% | +0% |
CAP (no TATA) | +0% | +0% | +0% |
Branch point | +1% | +1% | +1% |
Signal peptide | -1% | -1% | +0% |
Intron phase | +1% | +1% | +0% |
CpG islands | +0% | +0% | -1% |
Isochore switching | +0% | +1% | +1% |
UTR (trained on UTR) | -15% | -30% | -7% |