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Table 3 Results of incorporating additional features into GeneZilla evaluated on RefSeq genes

From: JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions

  Nuc Exon Gene
polyA -1% +1% +2%
TATA+CAP +0% +0% +1%
TATA (no CAP) +0% +0% +0%
CAP (no TATA) +0% +0% +0%
Branch point +1% +1% +1%
Signal peptide -1% -1% +0%
Intron phase +1% +1% +0%
CpG islands +0% +0% -1%
Isochore switching +0% +1% +1%
UTR (trained on UTR) -15% -30% -7%
  1. Values are changes in nucleotide (Nuc), whole exon (Exon), or whole gene (Gene) accuracy, as measured by F-score. Individual features are described in the text.