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Table 2 Results of applying JIGSAW with all available evidence

From: JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions

  Gene Sn Gene Sp Exon Sn Exon Sp Nuc Sn Nuc Sp Missed Genes Missed Exons Inserted Exons
JIGSAW-mRNA 48% 60% 76% 93% 84% 97% 17% 11% 4%
JIGSAW-All-EST 52% 52% 77% 88% 91% 91% 6% 10% 8%
JIGSAW-KnownGene 71% 74% 76% 95% 87% 96% 7% 12% 3%
JIGSAW-All 74% 70% 80% 92% 93% 94% 3% 7% 6%
KnownGene 77% 73%* 78% 82% 89% 94% 13% 10% 4%
JIGSAW-EGASP 73% 66% 81% 89% 95% 92% 4% 6% 8%
  1. * KnownGene predicts multiple transcripts per gene locus with transcript specificity of 47%. The percentage of test genes and exons that do not overlap a prediction are listed in the Missed Genes and Missed Exons columns, respectively. The rightmost column shows the percentage of predicted exons inserted into true introns. See text for details. Nuc, nucleotide; Sn, sensitivity; Sp, specificity.