Table 2 Results of applying JIGSAW with all available evidence
From: JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions
| Â | Gene Sn | Gene Sp | Exon Sn | Exon Sp | Nuc Sn | Nuc Sp | Missed Genes | Missed Exons | Inserted Exons |
|---|---|---|---|---|---|---|---|---|---|
JIGSAW-mRNA | 48% | 60% | 76% | 93% | 84% | 97% | 17% | 11% | 4% |
JIGSAW-All-EST | 52% | 52% | 77% | 88% | 91% | 91% | 6% | 10% | 8% |
JIGSAW-KnownGene | 71% | 74% | 76% | 95% | 87% | 96% | 7% | 12% | 3% |
JIGSAW-All | 74% | 70% | 80% | 92% | 93% | 94% | 3% | 7% | 6% |
KnownGene | 77% | 73%* | 78% | 82% | 89% | 94% | 13% | 10% | 4% |
JIGSAW-EGASP | 73% | 66% | 81% | 89% | 95% | 92% | 4% | 6% | 8% |