Table 1 Results for JIGSAW performance on the 31 ENCODE test regions when utilizing ab initio predictions and EST data
From: JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions
| Â | Gene Sn | Gene Sp | Exon Sn | Exon Sp | Nuc Sn | Nuc Sp | Missed Genes | Missed Exons | Inserted Exons |
|---|---|---|---|---|---|---|---|---|---|
JIGSAW-GeneFinder4 | 22% | 24% | 59% | 77% | 77% | 87% | 15% | 9% | 9% |
JIGSAW-GeneFinder6 | 25% | 21% | 67% | 73% | 87% | 85% | 6% | 3% | 13% |
JIGSAW-non-Human-EST | 39% | 37% | 70% | 83% | 88% | 90% | 7% | 5% | 7% |
JIGSAW-non-Human-EST+ | 38% | 34% | 71% | 80% | 91% | 87% | 5% | 3% | 10% |