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Table 2 Diagnostic for GENCODE genes missed by Exogean

From: Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA

Class of diagnostic Number of cases Description of the cause
1 33 Proteins matching multiple neighboring genes in clusters
2 8 GENCODE CDS size below 300 nucleotides
3 3 GENCODE CDS interrupted by the boundaries of the Encode region
4 2 Insufficient evidence to predict the gene
5 3 Protein evidence eliminated by Exogean
6 1 mRNA evidence eliminated by Exogean
7 2 Intron donor/acceptor sites not accepted by Exogean
8 1 mRNA evidence was misaligned with genomic DNA