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Table 1 Exogean performances in identifying GENCODE coding sequences

From: Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA

Measure

Sensitivity (%)

Specificity (%)

Exogean correct

Exogean wrong

GENCODE missed

GENCODE total

Overlap

      

   Nucleotides

84.18

94.33

371,369

22,301

69,791

441,160

   Exons

90.12

94.94

2,495

133

273

2764

   Transcripts

89.37

97.08

498

15

151

649

   Genes

82.09

96.35

211

8

53

296

Exact

      

   Nucleotides

84.18

94.33

371,369

22,301

69,791

441,160

   Exons

79.34

83.45

2,193

435

571

2764

   Transcripts

42.53

52.44

267

237

373

649

   Genes

63.18

80.82

187

32

109

296