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Table 1 Analysis of RefSeq and ENSEMBL ENCODE annotation compared with GENCODE

From: GENCODE: producing a reference annotation for ENCODE

  RefSeq ENSEMBL
No. (unique) exons 3,984 4,734
No. transcripts 577 738
No. exons overlapping GENCODE exons (%) 5,118 (98.6%) 4,469 (94.4%)
No. transcripts overlapping GENCODE (%) 567 (98.3%) 675 (91.5%)
No. GENCODE exons overlapped (total = 8,865) (%) 7,084 (80.0%) 7,450 (84.0%)
No. GENCODE transcripts overlapped (total = 2,608) (%) 2,327 (89.2%) 2,395 (91.8%)