From: EGASP: the human ENCODE Genome Annotation Assessment Project
 | Nucleotide | Exon | |||||
---|---|---|---|---|---|---|---|
 | NSn | NSp | N CC | ESn | ESp | ME | WE |
Category 1 | Â | Â | Â | Â | Â | Â | Â |
   FGENESH++ | 48.87% | 81.16% | 0.62 | 35.84% | 58.41% | 19.20% | 22.84% |
   PAIRAGON-any | 56.31% | 89.36% | 0.70 | 41.23% | 74.93% | 15.83% | 7.95% |
Category 3 | Â | Â | Â | Â | Â | Â | Â |
   ACEVIEW | 88.08% | 79.47% | 0.83 | 64.16% | 61.18% | 3.60% | 10.41% |
   ENSEMBL | 61.61% | 95.26% | 0.76 | 41.61% | 73.41% | 12.84% | 7.09% |
   EXOGEAN | 60.58% | 94.73% | 0.75 | 48.87% | 76.29% | 10.38% | 4.16% |
   PAIRAGON+NSCAN_EST | 56.22% | 89.35% | 0.70 | 41.11% | 74.98% | 16.06% | 7.98% |
Category 4 | Â | Â | Â | Â | Â | Â | Â |
   NSCAN | 39.55% | 78.69% | 0.55 | 32.41% | 65.25% | 26.10% | 14.69% |
UCSC Tracks | Â | Â | Â | Â | Â | Â | Â |
   ACEMBLY | 91.94% | 53.98% | 0.70 | 65.51% | 44.28% | 2.15% | 18.26% |
   ECgene | 93.00% | 38.68% | 0.59 | 58.17% | 34.83% | 1.81% | 34.31% |
   ENSgene | 62.43% | 95.27% | 0.77 | 41.71% | 72.65% | 12.62% | 7.10% |
   KNOWNgene | 65.74% | 91.82% | 0.77 | 43.84% | 74.57% | 13.58% | 2.74% |
   MGCgene | 29.17% | 96.73% | 0.53 | 21.21% | 74.10% | 47.16% | 2.22% |
   REFgene | 57.51% | 97.07% | 0.74 | 38.35% | 83.51% | 19.28% | 0.91% |