A computational approach for identifying pseudogenes in the ENCODE regions

Table 1 Separation of 184 pseudogenes in ENCODE regions identified in this study

Final pseudogene type*	Detected only by routine P	Detected by both routines	Detected only by routine D
Processed	60	30	3
Non-processed
Duplicated	3	13^†	3
Fragment	60	1	11

*The types are the final classification after information from routines P and D was combined. They could be different from a pseudogene's initial type labeled in either routine P or D. ^†In routine P, two were annotated as processed and two as fragments and another four were identified partially.

ISSN: 1474-760X