Automatic annotation of eukaryotic genes, pseudogenes and promoters

Table 8 Fprom predictions on some GenBank entries with experimentally verified TSS

Gene	GenBank accession number	Length (bp)	True TSS	Predicted TSS	Number of false positives
CXCR4	AJ224869	8,747	2,632	2,632	7
HOX3D	X61755	4,968	2,280	2,223	7
DAF	M64356	2,003	733	795	2
GJB1	L47127	950	404	415	2
ID4	AF030295	1,473	1,066	1,095	2
C inhibitor	M68516	15,571	2,200	2,049	2
MBD1	AJ132338	2,951	1,964	1,891	1
Id -3	X73428	2,481	665	637	4

ISSN: 1474-760X