From: Automatic annotation of eukaryotic genes, pseudogenes and promoters
Characteristics | D2 for TATA+ promoters |
---|---|
Hexaplets in region [-200, -45] | 3.1 |
Hexaplets in region [1, 40] | 4.0 |
TATA box score in region [-45, -25] | 2.3 |
TATA box average score in region [-45, -25] | 2.2 |
Triplets in region [-200, -45] | 2.2 |
Triplets in region [0, 40] | 2.9 |
Position triplet matrix in region [-50, +30] | 7.0 |
Protein-induced deformability | 2.9 |
CpG content | 3.0 |
Similarity in region [-200, -100] | 1.0 |
Motif density in region [-200, -100] | 4.5 |
Protein-DNA-twist | 0.3 |
Motif density in region [-100, -1] (reverse chain) | 2.3 |
Total Mahalonobis distance | 14.8 |
Number of promoters/non-promoters | 366/18600 |