Table 6 Accuracy of gene prediction using similar Drosophila proteins
From: Automatic annotation of eukaryotic genes, pseudogenes and promoters
| Â | Sn ex | Sno ex | Sp ex | Sn nuc | Sp nuc | CC | %CG |
|---|---|---|---|---|---|---|---|
Similarity of Drosophila protein >80% in 66 sequences | |||||||
   Fgenesh | 90.5 | 93.8 | 95.1 | 97.9 | 96.9 | 0.950 | 55 |
   Genewise | 79.3 | 83.9 | 86.8 | 97.3 | 99.5 | 0.985 | 23 |
   Fgenesh+ | 95.1 | 97.8 | 97.0 | 98.9 | 99.5 | 0.9914 | 70 |
   Prot_map | 86.4 | 95.3 | 88.1 | 97.6 | 99.0 | 0.982 | 41 |
60% < similarity of Drosophila protein <80% in 290 sequences | |||||||
   Fgenesh | 88.6 | 93.1 | 90.8 | 94.9 | 93.8 | 0.941 | 34 |
   Genewise | 76.3 | 91.8 | 82.9 | 92.8 | 99.4 | 0.959 | 7 |
   Fgenesh+ | 89.2 | 94.4 | 92.7 | 95.5 | 98.5 | 0.968 | 44 |
   Prot_map | 75.1 | 92.5 | 74.9 | 91.4 | 97.5 | 0.941 | 10 |