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Table 2 Exact prediction of all CDS in a gene

From: Automatic annotation of eukaryotic genes, pseudogenes and promoters

  All genes mRNA supported Protein supported Ab initio
No. of nucleotides predicted (%) 787,505 (100%) 274,889 (34.91%) 417,202 (52.98%) 104,003 (13.21%)
No. of transcripts predicted (%) 820 (100%) 314 (38.29%) 298 (36.34%) 208 (25.37%)
No. of SoftBerry transcripts identical to HAVANA transcripts (%)* 346 of 820 (42%) 191 of 314 (61%) 154 of 298 (52%) 1 of 208 (0.48%)
  1. *Transcripts identical means that their CDS parts (including protein coding exons and coding parts of 5' and 3' exons) are identical; the percentage of SoftBerry transcripts is relative to the number of Softberry transcripts predicted in the corresponding category: mRNA supported, protein supported or ab initio.