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Table 1 Accuracy of coding exon prediction by Fgenesh++ pipeline

From: Automatic annotation of eukaryotic genes, pseudogenes and promoters

  All genes, Sn/Sp (%) mRNA supported, Sp (%) Protein supported, Sp (%) Ab initio, Sp (%)
Nucleotide level 93.00/79.54 94.19 86.64 13.98
CDS EXACT 78.42/74.18 90.20 84.28 7.85
CDS 1EDGE 91.55/78.51 95.00 88.77 10.47
CDS OVERLAP 92.31/78.85 95.53 89.02 10.74
  1. CDS is considered to be predicted correctly if: both CDS coordinates are predicted correctly (CDS EXACT); at least one CDS edge is predicted correctly (CDS 1EDGE);or predicted CDS overlaps with known CDS (CDS OVERLAP).