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Table 1 Accuracy of coding exon prediction by Fgenesh++ pipeline

From: Automatic annotation of eukaryotic genes, pseudogenes and promoters

 

All genes, Sn/Sp (%)

mRNA supported, Sp (%)

Protein supported, Sp (%)

Ab initio, Sp (%)

Nucleotide level

93.00/79.54

94.19

86.64

13.98

CDS EXACT

78.42/74.18

90.20

84.28

7.85

CDS 1EDGE

91.55/78.51

95.00

88.77

10.47

CDS OVERLAP

92.31/78.85

95.53

89.02

10.74

  1. CDS is considered to be predicted correctly if: both CDS coordinates are predicted correctly (CDS EXACT); at least one CDS edge is predicted correctly (CDS 1EDGE);or predicted CDS overlaps with known CDS (CDS OVERLAP).
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Genome Biology

ISSN: 1474-760X

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