Table 1 Correlation of tissue specificities measured by relative entropy in CAGE and UniGene EST clusters
From: Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters
Gene set | EST versus CAGE: Spearman rank correlation coefficient | Spearman rank correlation P value | Number of genes |
|---|---|---|---|
Whole brain specific | 216 | 1.10 × 10-3 | 17 |
Testis specific | 48 | 9.68 × 10-2 | 9 |
Heart specific | 40 | 1.48 × 10-2 | 10 |
Liver specific | 20,898 | 1.32 × 10-6 | 66 |
Lung specific | 92 | 1.81 × 10-2 | 12 |
Cerebellum specific | 186 | <2.20 × 10-16 | 20 |
Citric acid cycle | 318 | 2.90 × 10-1 | 14 |
Ubiquitin-mediated proteolysis pathway | 886 | 5.94 × 10-3 | 23 |
Housekeeping genes | 2,208,352 | 8.54 × 10-6 | 263 |
All sets combined | 5,269,164 | <2.20 × 10-16 | 434 |