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Table 3 Number of unique N-linked glycosites and percentage of sites from intracellular or extracellular proteins using different peptide probability thresholds

From: UniPep - a database for human N-linked glycosites: a resource for biomarker discovery

  Probability threshold Database
  ≥0.5 ≥0.8 ≥0.9 ≥0.95 ≥0.99  
Number of unique N-linked glycosites 5202 2870 2265 1895 1522 52442
Number of unique N-linked glycosites from intracellular proteins 2207 817 363 264 124 32770
Number of unique N-linked glycosites from secreted proteins 1326 1086 1011 946 834 7195
Number of unique N-linked glycosites from transmembrane proteins 976 523 408 337 263 10359
Number of unique N-linked glycosites from cell surface proteins 633 444 383 348 301 5138
Number of unique N-linked glycosites from all extracellular proteins 2935 2053 1802 1631 1398 22692