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Table 2 False-positive and false-negative rates of peptide identifications in liver tissue predicted by PeptideProphet at different probability thresholds

From: UniPep - a database for human N-linked glycosites: a resource for biomarker discovery

Probability score cutoff False-negative rate False-positive rate
0.99 0.6042 0.0025
0.95 0.4037 0.0099
0.90 0.3297 0.0172
0.80 0.2621 0.0304
0.70 0.2252 0.0437
0.60 0.1964 0.0593
0.50 0.1713 0.0787
0.40 0.1440 0.1091
0.30 0.1262 0.1364
0.20 0.1041 0.1877
0.10 0.0724 0.3010
0.00 0.0000 0.9295