Table 2 Representative sequences from each family of chimpanzee endogenous retroviruses
From: Identification, characterization and comparative genomics of chimpanzee endogenous retroviruses
Family name: chimp family (orthologous human family) | tRNA primer | Location on chromosome (chromosome no: position) | 5' and 3' LTR % identity | Length of 5'/3' LTRs (bp) | Target site repeats | Dinucleotides | Element length (bp) |
|---|---|---|---|---|---|---|---|
CERV 1/PTERV1 | Pro | 8:62466629..62474817 | 99.7 | 409/409 | GTAT/GTAT | TG/CA | 8,189 |
CERV 2 | Pro | 1:53871490..53880190 | 98.8 | 497/486 | GTGA/GTGA | TG/CA | 8,338 |
CERV 3 (HERVS71) | Thr | 7:45002408..45013133 | 90 | 528/524 | AGGC/AGGC | TG/CA | 10,726 |
CERV 4 (HERV3) | Arg | 6:65506183..65515842 | 91.7 | 643/592 | TATA/TATA | TG/CA | 9,660 |
CERV 5 (HERV15) | Thr | 20:22151622..22161290 | 90 | 495/500 | TTTT/TTTT | TG/CC | 9,669 |
CERV 6 (HERV 1*) | Thr | 8:43017710..43027603 | 92 | 511/512 | CCAC/CCAC | TG/CA | 9,697 |
CERV 7 (Harlequin) | Glu | 14:49265903..49274634 | 90 | 477/470 | ATAAAT/ATAAAT | TG/CA | 8,745 |
CERV 8 (HERVE) | Glu | 4:29336385..29342031 | 92.3 | 354/355 | AACA/AACA | TG/CA | 5,647 |
CERV 9 (HERV 2*) | His | 1:74420643..74424449 | 74.5 | 318/315 | CTTTT/CTTTT | TG/CA | 3,807 |
CERV 10 (HERVH48) | Phe | 1:162967211..16293841 | 86 | 404/401 | ATTCT/ATTCT | TG/CA | 6,640 |
CERV 11 (HERV-H) | His | 13:88231927..88241255 | 91 | 367/367 | TGTTA/TGTTA | TG/CA | 9,329 |
CERV 12 (HERVFH19) | ND | 1:9084130..9093376 | 88 | 412/421 | ND | ND | 9,236 |
CERV 13 (PRIMA4) | Arg | X:81351532..81361722 | 86 | 627/617 | CCTC/CCTC | TG/CA | 10,191 |
CERV 14 (HERV 5*) | Leu, Arg | 3:58020412..58027601 | 83 | 420/430 | CACT/CACT | TG/CA | 7,198 |
CERV 15 (HERV-P) | Pro, Val | 6:89330483..89339138 | 87 | 634/625 | ATACC/ATACT | TG/CA | 8,500 |
CERV 16 (HERV-17) | Gln, Arg | 4:55955342..55963662 | 89 | 775/760 | CCTT/CCTT | TG/CA | 8,329 |
CERV 17 (HERV30) | Leu, Arg | 5:121436599..121446300 | 89 | 698/700 | AAAG/AAAG | TG/CA | 9,702 |
CERV 18 (HERV 9) | Arg, Lys, Pro | 5:39234784..39242752 | 87 | 423/449 | GGAG/GGAG | TG/CA | 7,966 |
CERV 19 (PABL_B) | Arg, Leu | 7:75174020..75182429 | 83 | 671/667 | AGAG/AGAG | TG/CA | 8,410 |
CERV 20 (HERVP71A) | Pro | X:121795847..121803454 | 85 | 464/458 | TTTTC/TTTTC | TG/CA | 7,608 |
CERV 21 (HERV 4*) | Thr, Pro | 2:14653540..14661848 | 91 | 361/363 | ATGA/ATGA | TG/CA | 8,321 |
CERV 22 (HERV 6*) | Thr | 16:84359558..84368114 | 86 | 434/435 | ND | AG/CT | 8,557 |
CERV 23 (HERV 7*) | Pro | 17:39042670..39052505 | 88 | 582/575 | AGAC/AGAC | TG/CA | 9,836 |
CERV 24 (HERV 10*) | Pro | 17:27621756..27630879 | 87 | 429/431 | TAAT/TAAT | TG/CA | 9,132 |
CERV 25 (HERV 11*) | Pro | 1:32316520..32325874 | 84 | 613/621 | GCAAA/GCAAA | TG/CA | 9,480 |
CERV 26 (HERV 12*) | ND | 2:171938873..171948150 | 93 | 509/506 | AATT/ACTT | TG/CA | 9,279 |
CERV 27 (HERVI) | Lys | 5:122623439..122630725 | 89.9 | 497/506 | CAGT/CAGT | CG/CA | 7,287 |
CERV 28 (HERVIP10F) | Ala | 23:41095392..41106316 | 95.6 | 494/496 | TACT/TACT | TG/CA | 10,925 |
CERV 29 (HERVG25) | ND | 6:151527383..151531731 | 84 | 220/226 | ND | ND | 4,349 |
CERV 30 (HERVK10) | Lys | 10:4757815..4766975 | 99.4 | 961/958 | ATTAT/ATTAT | TG/CA | 9,161 |
CERV 31 (HERVK14) | Lys | 9:74609341..74617943 | 92 | 623/618 | CAATG/CAATG | TG/CA | 8,603 |
CERV 32 (HERVK14C) | Lys | 12:84993042..85001650 | 92 | 583/583 | ND | TG/CA | 8,609 |
CERV 33 (HERVK(C4)) | Lys | 1:134530572..134538281 | 94 | 541/547 | ATTAAG/ATTAAG | TG/CA | 7,710 |
CERV 34 (HERVK9) | Lys | X:58520547..58526579 | 93.4 | 510/508 | GCCTAG/GCCTAG | TG/CA | 6,033 |
CERV 35 (HERVK13) | ND | 19:41852728..41865530 | 83 | 812/818 | ND | ND | 12,803 |
CERV 36 (HERVK11D) | Lys | 5:123901088..123908580 | 91 | 865/874 | ATAAAT/ATAAAT | TG/TA | 7,493 |
CERV 37 (HERVK11) | Lys | 2:81402412..81411338 | 95.7 | 1,079/1,079 | ATAAAA/ATAAAA | TG/CA | 8,927 |
CERV 38 (HERVK3) | Lys | 5:26871940..26880204 | 95.2 | 428/431 | GGTAAA/GGTGAA | TG/CA | 8,265 |
CERV 39 (HERVK22) | Met | 5:103484321..103492150 | 85 | 477/497 | GTTCTT/GTTCTT | TG/CA | 7,830 |
CERV 40 (HERV S) | Ser | 1:147219818..147226527 | 85 | 325/329 | CCATC/CCATC | TG/CA | 6,710 |
CERV 41 (HERV16) | ND | X:103812023..103815002 | ND | ND | ND | ND | 2,980 |
CERV 42 (HERVL) | Leu | 3:83740925..83746481 | 82 | 445/458 | ATAAT/ATAAT | TG/CA | 5,547 |