From: Intron gain and loss in segmentally duplicated genes in rice
Intron lost | Intron retained | |||||
---|---|---|---|---|---|---|
Locus name* | 4-mer†| Rank‡ | Locus name§ | Phase | 4-mer | Rank |
LOC_Os05g48520.1 | ACCG | 53 | LOC_Os01g48540.1 | 0 | ATCG | 186 |
LOC_Os06g44300.1 | TACA | 136 | LOC_Os02g08230.1 | 0 | TACA | 136 |
LOC_Os06g11920.1 | GGCT | 183 | LOC_Os02g51600.1 | 0 | GGTT | 222 |
LOC_Os06g10850.1 | GCCA | 206 | LOC_Os02g52830.1 | 0 | GTGA | 255 |
LOC_Os07g02440.1 | GGCT | 183 | LOC_Os03g55420.1 | 0 | GGAT | 201 |
LOC_Os07g12340.1 | CTGG | 176 | LOC_Os03g60080.1 | 0 | TTGG | 169 |
LOC_Os01g13130.1 | GCCA | 206 | LOC_Os05g14240.1 | 0 | GCGA | 178 |
LOC_Os11g01820.1 | GTCG | 204 | LOC_Os05g39600.1 | 0 | GGCG | 152 |
LOC_Os12g02840.1 | GCCG | 143 | LOC_Os05g40650.1 | 0 | GCTG | 251 |
LOC_Os02g14430.1 | GGCT | 183 | LOC_Os06g35480.1 | 0 | GGGT | 178 |
LOC_Os09g39720.1 | ATAC | 194 | LOC_Os08g44590.1 | 0 | ATAT | 215 |
LOC_Os02g54640.1 | GTGT | 243 | LOC_Os09g26160.1 | 0 | GCAT | 223 |
LOC_Os08g39370.1 | GTGC | 246 | LOC_Os09g31130.1 | 0 | ATCA | 230 |
LOC_Os08g41880.1 | ATGA | 214 | LOC_Os09g32840.1 | 0 | ATGA | 214 |
LOC_Os03g01820.1 | GCGG | 173 | LOC_Os10g39810.1 | 0 | ATGG | 232 |
LOC_Os05g38420.1 | GCGA | 205 | LOC_Os01g62490.1 | 1 | GCGA | 205 |
LOC_Os06g12960.1 | AGGT | 156 | LOC_Os02g50810.1 | 1 | AGGT | 156 |
LOC_Os09g26160.1 | GGCA | 229 | LOC_Os02g54640.1 | 1 | AGGA | 226 |
LOC_Os06g51050.1 | GCGG | 156 | LOC_Os03g04060.1 | 1 | GTGG | 255 |
LOC_Os02g46780.1 | GATT | 244 | LOC_Os04g50770.1 | 1 | GTTT | 251 |
LOC_Os01g50760.1 | GAAA | 246 | LOC_Os05g46580.1 | 1 | GGAA | 247 |
LOC_Os11g09020.1 | CCAA | 156 | LOC_Os12g08090.1 | 1 | CCAA | 156 |
LOC_Os05g04690.1 | GAAC | 235 | LOC_Os01g18400.1 | 2 | GAAC | 235 |
LOC_Os05g48700.1 | GGCG | 189 | LOC_Os01g55240.1 | 2 | GGCC | 158 |
LOC_Os05g39720.1 | GAGG | 218 | LOC_Os01g61080.1 | 2 | GAGG | 218 |
LOC_Os07g49280.1 | CTTC | 163 | LOC_Os03g18140.1 | 2 | GTTC | 251 |
LOC_Os07g49150.1 | GTAC | 255 | LOC_Os03g18690.1 | 2 | GTAT | 256 |
LOC_Os07g49000.1 | GTAC | 255 | LOC_Os03g19200.1 | 2 | GTAC | 255 |
LOC_Os09g26360.1 | GTAC | 255 | LOC_Os08g34910.1 | 2 | GTAC | 255 |
LOC_Os08g41730.1 | CACG | 97 | LOC_Os09g32800.1 | 2 | GACG | 158 |
LOC_Os12g08090.1 | CGCC | 18 | LOC_Os11g09020.1 | 2 | GGCG | 189 |
LOC_Os01g09540.1 | GTAC | 255 | LOC_Os05g10210.1 | 2 | AACT | 134 |
LOC_Os05g10210.1 | GCCT | 182 | LOC_Os01g09540.1 | 2 | GTCG | 194 |
LOC_Os03g21820.1 | CGTG | 153 | LOC_Os05g39990.1 | 2 | GGTG | 233 |