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Table 4 Representative distribution of the ESTs across diagnostic peptides

From: Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics

HUGO gene ID Ensembl gene ID PT ALL PM IE OE NE Gene description
- ENSG00000198209 17 17 15 0 2 0 Complement component 4B preproprotein
A1BG ENSG00000121410 10 10 10 0 0 0 Alpha-1B-glycoprotein precursor (alpha-1-B glycoprotein)
A2M ENSG00000175899 20 20 19 0 0 1 Alpha-2-macroglobulin precursor (alpha-2-M)
AFM ENSG00000079557 4 3 3 0 0 0 Afamin precursor (alpha-albumin; alpha-Alb)
AGT ENSG00000135744 13 13 13 0 0 0 Angiotensinogen precursor (contains angiotensin I (Ang I); angiotensin II (Ang II); angiotensin III (Ang III) (Des-Asp[1]-angiotensin II)).
AHSG ENSG00000145192 9 9 9 0 0 0 Alpha-2-HS-glycoprotein precursor (fetuin-A; alpha-2-Z-globulin; Ba- alpha-2-glycoprotein)
ALB ENSG00000163631 30 30 30 0 0 0 Serum albumin precursor
ANKRD24 ENSG00000089847 3 3 0 2 1 0 F20887_1, partial CDS (fragment)
APC2 ENSG00000115266 9 6 0 3 0 3 Adenomatosis polyposis coli 2
APCS ENSG00000132703 7 7 7 0 0 0 Serum amyloid P-component precursor (SAP; 9.5S alpha-1-glycoprotein; contains serum amyloid P-component(1-203))
APOA1 ENSG00000118137 18 18 18 0 0 0 Apolipoprotein A-I precursor (Apo-AI; ApoA-I; contains apolipoprotein A-I(1-242))
APOA2 ENSG00000158874 5 5 4 0 1 0 Apolipoprotein A-II precursor (Apo-AII; ApoA-II; contains apolipoprotein A-II(1-76))
APOB ENSG00000084674 95 95 94 0 1 0 Apolipoprotein B-100 precursor (Apo B-100; contains apolipoprotein B-48 (Apo B-48))
APOC3 ENSG00000110245 2 2 2 0 0 0 Apolipoprotein C-III precursor (Apo-CIII; ApoC-III)
APOE ENSG00000130203 10 10 10 0 0 0 Apolipoprotein E precursor (Apo-E)
APOF ENSG00000175336 4 4 4 0 0 0 Apolipoprotein F precursor (Apo-F)
APOH ENSG00000091583 6 6 6 0 0 0 Beta-2-glycoprotein I precursor (apolipoprotein H; Apo-H; B2GPI; Beta(2)GPI; activated protein C-binding protein; APC inhibitor; anticardiolipin cofactor)
APOL1 ENSG00000100342 5 5 5 0 0 0 Apolipoprotein-L1 precursor (apolipoprotein L-I; apolipoprotein L; ApoL-I; Apo-L; ApoL)
AZGP1 ENSG00000160862 6 6 6 0 0 0 Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein; Zn- alpha-2-GP)
AZI1 ENSG00000141577 2 2 0 0 2 0 5-azacytidine induced 1 isoform a
BF ENSG00000166285 5 5 4 0 1 0 Complement factor B precursor (EC 3.4.21.47; C3/C5 convertase; properdin factor B; glycine-rich beta glycoprotein; GBG; PBF2)
  1. A representative sampling of the total number of ESTs matched to diagnostic peptides as well as the parent gene that contains the peptide. PT, total number of non-redundant (NR) peptides associated with this gene; All, number of peptides with EST hits; PM, number of PM peptides with EST hits; IE, number of IE with EST hits; OE, number of OE with EST hits; NE, number of NE with EST hits. A complete list is given in Additional data file 2.