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Table 2 A representative set of peptide containing genes

From: Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics

HUGO gene ID Ensembl gene ID PT PM IE OE NE Gene description
- ENSG00000198209 28 26 0 2 0 Complement component 4B preproprotein
A1BG ENSG00000121410 19 19 0 0 0 Alpha-1B-glycoprotein precursor (Alpha-1-B glycoprotein)
A2M ENSG00000175899 47 46 0 0 1 Alpha-2-macroglobulin precursor (Alpha-2-M)
AFM ENSG00000079557 12 11 0 0 1 Afamin precursor (Alpha-albumin; Alpha-Alb)
AGT ENSG00000135744 21 21 0 0 0 Angiotensinogen precursor (contains angiotensin I (Ang I); angiotensin II (Ang II); angiotensin III (Ang III) (Des-Asp[1]-angiotensin II)).
AHSG ENSG00000145192 24 24 0 0 0 Alpha-2-HS-glycoprotein precursor (Fetuin-A; Alpha-2-Z-globulin; Ba-alpha-2-glycoprotein)
ALB ENSG00000163631 111 108 0 3 0 Serum albumin precursor
ANKRD24 ENSG00000089847 7 0 5 2 0 F20887_1, partial CDS (fragment)
APC2 ENSG00000115266 9 0 5 0 4 Adenomatosis polyposis coli 2
APCS ENSG00000132703 11 11 0 0 0 Serum amyloid P-component precursor (SAP; 9.5S alpha-1-glycoprotein; contains serum amyloid P-component(1-203))
APOA1 ENSG00000118137 53 52 0 1 0 Apolipoprotein A-I precursor (Apo-AI; ApoA-I; contains apolipoprotein A-I(1-242))
APOA2 ENSG00000158874 17 15 0 2 0 Apolipoprotein A-II precursor (Apo-AII; ApoA-II; contains apolipoprotein A-II(1-76))
APOB ENSG00000084674 112 110 0 2 0 Apolipoprotein B-100 precursor (Apo B-100; contains apolipoprotein B-48 (Apo B-48))
APOC3 ENSG00000110245 4 4 0 0 0 Apolipoprotein C-III precursor (Apo-CIII; ApoC-III)
APOE ENSG00000130203 13 13 0 0 0 Apolipoprotein E precursor (Apo-E)
APOF ENSG00000175336 4 4 0 0 0 Apolipoprotein F precursor (Apo-F)
APOH ENSG00000091583 15 15 0 0 0 Beta-2-glycoprotein I precursor (apolipoprotein H; Apo-H; B2GPI; Beta(2)GPI; activated protein C-binding protein; APC inhibitor; anticardiolipin cofactor)
APOL1 ENSG00000100342 5 5 0 0 0 Apolipoprotein-L1 precursor (apolipoprotein L-I; apolipoprotein L; ApoL-I; Apo-L; ApoL)
AZGP1 ENSG00000160862 9 9 0 0 0 Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein; Zn-alpha-2-GP)
AZI1 ENSG00000141577 3 0 0 3 0 5-azacytidine induced 1 isoform a
BF ENSG00000166285 9 7 0 2 0 Complement factor B precursor (EC 3.4.21.47; C3/C5 convertase; properdin factor B; glycine-rich beta glycoprotein; GBG; PBF2)
  1. A breakdown of the distribution of diagnostic peptides among the 128 parent genes they occur in. HUGO gene ID, HUGO gene identifier; Ensembl gene ID, the Ensembl identifier for the gene containing the diagnostic peptides; PT, the total number of diagnostic peptides found within the coding boundaries of this gene; PM, number of perfect-matching peptides to a protein product of this gene; IE, number of intra-exonic peptides associated with this gene; OE, number of exon overlapping peptides associated with this gene; NE, number of non-exonic peptides associated with this gene; Gene description, the name given to the gene according to the Ensembl Genome Browser database. A complete list is available in Additional data file 1.