Table 2 Significantly enriched GO terms in transcript groups
From: Comparative profiling of the sense and antisense transcriptome of maize lines
GO term | Number in test group | Number in reference group | GO description |
|---|---|---|---|
Anther-specific (667) | |||
16,538 | 7 | 2 | Cyclin-dependent protein kinase regulator activity |
6,139 | 120 | 591 | Nucleobase, nucleoside, nucleotide and nucleic acid metabolism |
6,270 | 5 | 1 | DNA replication initiation |
Pollen-specific (165) | |||
30,599 | 9 | 10 | Pectinesterase activity |
4,857 | 10 | 23 | Enzyme inhibitor activity |
16,787 | 54 | 789 | Hydrolase activity |
31,410 | 39 | 513 | Cytoplasmic vesicle |
16,023 | 39 | 513 | Cytoplasmic membrane-bound vesicle |
16,789 | 10 | 38 | Carboxylic ester hydrolase activity |
4,553 | 12 | 62 | Hydrolase activity, hydrolyzing O-glycosyl compounds |
45,045 | 39 | 547 | Secretory pathway |
46,903 | 39 | 550 | Secretion |
16,798 | 12 | 69 | Hydrolase activity, acting on glycosyl bonds |
5,576 | 8 | 28 | Extracellular region |
42,545 | 4 | 2 | Cell wall modification |
6,810 | 57 | 1,063 | Transport |
51,234 | 57 | 1,065 | Establishment of localization |
3,779 | 6 | 16 | Actin binding |
51,179 | 57 | 1,068 | Localization |
8,092 | 7 | 25 | Cytoskeletal protein binding |
30,234 | 10 | 65 | Enzyme regulator activity |
45,330 | 3 | 1 | Aspartyl esterase activity |
7,010 | 10 | 68 | Cytoskeleton organization and biogenesis |
3,824 | 94 | 2,170 | Catalytic activity |
5,618 | 6 | 22 | Cell wall |
30,312 | 6 | 24 | External encapsulating structure |
8,150 | 136 | 3,596 | Biological_process |
30,036 | 5 | 16 | Actin cytoskeleton organization and biogenesis |
Leaf-specific (490) | |||
9,536 | 152 | 1,073 | Plastid |
19,825 | 5 | 3 | Oxygen binding |
Expressed in all three tissue types (1,091) | |||
12,505 | 29 | 43 | Endomembrane system |
Differentially expressed, ND101/W23 pollen versus W23 pollen (47) | |||
43,067 | 4 | 28 | Regulation of programmed cell death |
42,981 | 4 | 28 | Regulation of apoptosis |
6,916 | 3 | 12 | Anti-apoptosis |
43,069 | 3 | 14 | Negative regulation of programmed cell death |
43,066 | 3 | 14 | Negative regulation of apoptosis |
Differentially expressed, ND101/W23 juvenile leaf versus W23 juvenile leaf (158) | |||
16,491 | 22 | 304 | Oxidoreductase activity |
9,507 | 15 | 169 | Chloroplast |
9,579 | 7 | 40 | Thylakoid |