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Table 5 Numbers of amino acid runs and homogeneous runs

From: Distinct patterns of SSR distribution in the Arabidopsis thalianaand rice genomes

Amino acid*

Arabidopsis

Rice

 

Number of amino acid runs

Number of H-runs

% H-runs

Number of amino acid runs

Number of H-runs

% H-runs

Ala (4)

327

43

13.1

7,477

3,318

44.4

Gly (4)

853

171

20.0

6,349

2,461

38.8

Pro (4)

865

132

15.3

3,727

1,221

32.8

Ser (6)

1,997

322

16.1

2,862

742

25.9

Arg (6)

103

9

8.7

1,636

311

19.0

Glu (2)

831

370

44.5

1,387

734

52.9

Asp (2)

424

246

58.0

1,269

697

54.9

Gln (2)

451

169

37.5

1,077

634

58.9

Leu (6)

275

20

7.3

882

286

32.4

Thr (4)

215

64

29.8

479

264

55.1

Lys (2)

394

183

46.4

314

174

55.4

His (2)

146

87

59.6

303

218

71.9

Val (4)

51

5

9.8

267

108

40.4

Asn (2)

247

137

55.5

249

49

19.7

Phe (2)

46

28

60.9

34

24

70.6

Cys (2)

3

1

33.3

22

16

72.7

Met (1)

18

18

100.0

13

13

100.0

Trp (1)

0

0

0.0

7

7

100.0

Tyr (2)

4

0

0.0

7

6

85.7

Ile (3)

8

2

25.0

6

2

33.3

  1. *Numbers in parentheses indicate the numbers of codons that code for the amino acid. 'H-runs' refers to amino acid runs that consist of the exact same codon, equivalent to trinucleotide SSRs. '% H-runs' is the percentage of homogeneous runs.