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Table 5 Numbers of amino acid runs and homogeneous runs

From: Distinct patterns of SSR distribution in the Arabidopsis thalianaand rice genomes

Amino acid* Arabidopsis Rice
  Number of amino acid runs Number of H-runs % H-runs Number of amino acid runs Number of H-runs % H-runs
Ala (4) 327 43 13.1 7,477 3,318 44.4
Gly (4) 853 171 20.0 6,349 2,461 38.8
Pro (4) 865 132 15.3 3,727 1,221 32.8
Ser (6) 1,997 322 16.1 2,862 742 25.9
Arg (6) 103 9 8.7 1,636 311 19.0
Glu (2) 831 370 44.5 1,387 734 52.9
Asp (2) 424 246 58.0 1,269 697 54.9
Gln (2) 451 169 37.5 1,077 634 58.9
Leu (6) 275 20 7.3 882 286 32.4
Thr (4) 215 64 29.8 479 264 55.1
Lys (2) 394 183 46.4 314 174 55.4
His (2) 146 87 59.6 303 218 71.9
Val (4) 51 5 9.8 267 108 40.4
Asn (2) 247 137 55.5 249 49 19.7
Phe (2) 46 28 60.9 34 24 70.6
Cys (2) 3 1 33.3 22 16 72.7
Met (1) 18 18 100.0 13 13 100.0
Trp (1) 0 0 0.0 7 7 100.0
Tyr (2) 4 0 0.0 7 6 85.7
Ile (3) 8 2 25.0 6 2 33.3
  1. *Numbers in parentheses indicate the numbers of codons that code for the amino acid. 'H-runs' refers to amino acid runs that consist of the exact same codon, equivalent to trinucleotide SSRs. '% H-runs' is the percentage of homogeneous runs.