Table 2 Densities of the most abundant SSR (mono- and dinucleotide) types in different regions
From: Distinct patterns of SSR distribution in the Arabidopsis thalianaand rice genomes
| Mononucleotide* | Dinucleotide† | |
|---|---|---|
| Arabidopsis | ||
| 5'UTR | A: 432.7 (99.6%) | AG: 593.1 (89.3%) |
| C: 1.9 (0.4%) | AC: 48.8 (7.4%) | |
| Exons | A: 3.2 (95.9%) | AG: 6.4 (88.3%) |
| C: 0.1 (4.1%) | AT: 0.5 (7.2%) | |
| Introns | A: 320.3 (99.6%) | AT: 53.9 (43.9%) |
| C: 1.3 (0.4%) | AG: 42.9 (35%) | |
| 3'UTR | A: 339 (99.7%) | AT: 52.4 (42.6%) |
| C: 1 (0.3%) | AG: 48.2 (39.2%) | |
| Genome | A: 292.6 (98.8%) | AT: 55.9 (50.1%) |
| C: 3.7 (1.2%) | AG: 42.6 (38.2%) | |
| Rice | ||
| 5'UTR | A: 182.9 (73.7%) | AG: 380 (75.9%) |
| C: 65.2 (26.3%) | AT: 60.3 (12%) | |
| Exons | C: 2.3 (55.4%) | AT: 8.1 (50.1%) |
| A: 1.9 (44.6%) | AG: 7.3 (45.2%) | |
| Introns | A: 116.8 (87.9%) | AG: 32.3 (45.6%) |
| C: 16.1 (12.1%) | AT: 22 (31.1%) | |
| 3'UTR | A: 213.4 (95.8%) | AT: 34.9 (39.4%) |
| C: 9.4 (4.2%) | AG: 28.5 (32.2%) | |
| Genome | A: 127.7 (86.2%) | AG: 51.8 (43.6%) |
| C: 20.4 (13.8%) | AT: 42.6 (35.9%) |