|  | Under-represented TE type | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GO term | Description | Alu | L1 | L2 | LTR | DNA transp. | MIR | ||||||||||||
 | Molecular function | N | MCS | IG | N | MCS | IG | N | MCS | IG | N | MCS | IG | N | MCS | IG | N | MCS | IG |
GO:0003676 | Nucleic acid binding | - | - | - | - | - | - | 468 | 0.88* | -0.44* | 598 | 0.86* | -0.27* | - | - | - | 327 | 1.07 | -0.29* |
GO:0003677 | DNA binding | - | - | - | - | - | - | - | - | - | 394 | 1.27* | -0.17 | - | - | - | 219 | 1.6* | -0.34* |
GO:0003723 | RNA binding | - | - | - | - | - | - | 131 | 0.08 | -0.49* | 153 | 0.13 | -0.42* | - | - | - | 91 | 0.03 | -0.12 |
GO:0003700 | Transcription factor activity | 138 | 2.45* | -0.63* | 171 | 1.9* | -0.51* | 160 | 2.1* | -0.41* | 220 | 1.82* | -0.09 | 165 | 2.18* | -0.65* | 125 | 2.23* | -0.76* |
GO:0030528 | Transcription regulator activity | 159 | 2.35* | -0.59* | - | - | - | - | - | - | 279 | 1.57* | -0.1 | - | - | - | 152 | 2.04* | -0.67* |
GO:0004871 | Signal transducer activity | 348 | 0.32 | -0.45* | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0004888 | Transmembrane receptor activity | 138 | 0.23 | -0.31 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0005102 | Receptor binding | 137 | 0.5 | -0.57* | 170 | 0.29 | 0.03 | 149 | 0.24 | 0.14 | 192 | 0.33 | 0.2 | 155 | 0.32 | -0.02 | - | - | - |
GO:0001664 | G-protein-coupled receptor binding | - | - | - | 25 | -0.14 | -0.23 | - | - | - | - | - | - | 26 | -0.16 | -0.1 | - | - | - |
GO:0008083 | Growth factor activity | 47 | 0.98 | -0.16 | - | - | - | - | - | - | 64 | 0.73 | 0.45* | - | - | - | - | - | - |
GO:0005125 | Cytokine activity | 69 | 0.59 | -0.71* | 84 | 0.29 | -0.36 | - | - | - | 91 | 0.44 | 0.48* | 76 | 0.42 | 0.24 | - | - | - |
GO:0008009 | Chemokine activity | - | - | - | 25 | -0.14 | -0.23 | - | - | - | - | - | - | 26 | -0.16 | -0.1 | - | - | - |
GO:0042379 | Chemokine receptor binding | - | - | - | 25 | -0.14 | -0.23 | - | - | - | - | - | - | 26 | -0.16 | -0.1 | - | - | - |
GO:0005179 | Hormone activity | 33 | 0.49 | -0.71 | - | - | - | 41 | 0.11* | -0.44 | - | - | - | 34 | 0.19* | -0.47 | 27 | 0.49 | -0.64 |
GO:0005184 | Neuropeptide hormone activity | 10 | -0.12 | 0.27 | - | - | - | 11 | 0.01 | 0.68 | - | - | - | - | - | - | - | - | - |
GO:0004252 | Serine-type endopeptidase activity | - | - | - | 50 | -0.34* | -0.01 | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0004263 | Chymotrypsin activity | - | - | - | 38 | -0.45* | -0.1 | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0004295 | Trypsin activity | - | - | - | 39 | -0.45* | -0.21 | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0003735 | Structural constituent of ribosome | - | - | - | 100 | -0.34* | -0.25 | 89 | -0.41* | -0.72* | 116 | -0.37* | -0.58* | 79 | -0.35* | -0.5 | 63 | -0.33* | -0.47 |
GO:0005198 | Structural molecule activity | - | - | - | 212 | -0.04 | -0.4* | 192 | -0.11* | -0.43* | 260 | -0.07 | -0.2 | - | - | - | - | - | - |
 | Biological process |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
GO:0007275 | Development | 335 | 1.41* | -0.55* | 410 | 1.13* | -0.45* | 386 | 1.19* | -0.23 | 512 | 1.09* | 0.1 | 384 | 1.32* | -0.45* | 258 | 1.58* | -0.48* |
GO:0009653 | Morphogenesis | 222 | 1.24* | -0.48* | - | - | - | - | - | - | 334 | 0.94* | 0.21* | - | - | - | - | - | - |
GO:0009887 | Organogenesis | 186 | 1.03* | -0.46* | - | - | - | - | - | - | 270 | 0.8* | 0.22* | - | - | - | - | - | - |
GO:0009888 | Histogenesis | - | - | - | - | - | - | - | - | - | 47 | 0.49 | 0.46 | - | - | - | - | - | - |
GO:0008544 | Epidermis development | 24 | -0.27 | -1.4* | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0001501 | Skeletal development | 36 | 1.4* | -0.23 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0007267 | Cell-cell signaling | 137 | 0.71* | -0.27 | 162 | 0.69* | 0.03 | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0007166 | Cell surface receptor linked signal transduction | 161 | 0.29* | -0.45* | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0007186 | G-protein coupled receptor protein signaling pathway | 93 | 0.17 | -0.51* | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0006952 | Defense response | 172 | 0.13* | -0.75* | 217 | -0.08* | -0.16 | 202 | -0.11* | -0.19 | 259 | 0* | 0.01 | 219 | -0.04* | -0.2 | - | - | - |
GO:0006955 | Immune response | 155 | 0.17* | -0.7* | 201 | -0.08* | -0.19 | - | - | - | - | - | - | 202 | -0.05* | -0.17 | - | - | - |
GO:0050896 | Response to stimulus | 268 | 0.13 | -0.61* | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0009607 | Response to biotic stimulus | 187 | 0.1* | -0.69* | 240 | -0.1* | -0.21 | 222 | -0.14* | -0.16 | 290 | -0.05* | 0 | 235 | -0.07* | -0.25 | - | - | - |
GO:0009613 | Response to pest, pathogen or parasite | 99 | -0.02* | -0.8* | - | - | - | - | - | - | - | - | - | 127 | -0.33* | -0.13 | - | - | - |
GO:0043207 | Response to external biotic stimulus | 106 | -0.09* | -0.86* | - | - | - | - | - | - | - | - | - | 134 | -0.36* | -0.17 | - | - | - |
GO:0006817 | Phosphate transport | 27 | -0.05 | -0.39 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0006820 | Anion transport | 41 | 0.03 | -0.47 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0015698 | Inorganic anion transport | 38 | 0.03 | -0.49 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0006350 | Transcription | - | - | - | - | - | - | - | - | - | 386 | 1.22* | -0.16 | - | - | - | 211 | 1.43* | -0.43* |
GO:0045449 | Regulation of transcription | - | - | - | - | - | - | - | - | - | 365 | 1.31* | -0.15 | - | - | - | 198 | 1.53* | -0.45* |
GO:0006351 | Transcription, DNA-dependent | - | - | - | - | - | - | - | - | - | 369 | 1.25* | -0.16 | - | - | - | 203 | 1.48* | -0.45* |
GO:0006355 | Regulation of transcription, DNA-dependent | - | - | - | - | - | - | 267 | 1.38* | -0.23 | 355 | 1.31* | -0.16 | - | - | - | 196 | 1.53* | -0.46* |
GO:0006139 | Nucleobase, nucleoside, nucleotide and nucleic acid metabolism | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 301 | 1.08 | -0.23 |
GO:0019219 | Regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism | - | - | - | - | - | - | - | - | - | 371 | 1.29* | -0.16 | - | - | - | 202 | 1.51* | -0.46* |
GO:0019222 | Regulation of metabolism | - | - | - | - | - | - | 303 | 1.32* | -0.2 | 409 | 1.24* | -0.16 | - | - | - | 217 | 1.54* | -0.38* |
GO:0006412 | Protein biosynthesis | - | - | - | 144 | -0.14 | -0.34 | - | - | - | 179 | -0.1* | -0.48* | - | - | - | - | - | - |
GO:0050876 | Reproductive physiological process | 18 | 1.19 | -0.76 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
GO:0000003 | Reproduction | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 44 | 0.09* | -0.38 |
GO:0019953 | Sexual reproduction | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 43 | 0.06* | -0.38 |
GO:0007276 | Gametogenesis | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 39 | 0.14* | -0.39 |
GO:0048232 | Male gamete generation | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 33 | 0.07* | -0.05 |
GO:0007283 | Spermatogenesis | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 33 | 0.07* | -0.05 |