Table 1 Over-represented GO groups and promoter consensus sequences
Cluster | GO group |
|---|---|
Cluster 1 | Metabolism |
Biosynthesis | |
Cell organization and biogenesis | |
Amino acid metabolism | |
Nucleotide metabolism | |
Protein metabolism | |
Nucleotide biosynthesis | |
Carboxylic acid metabolism | |
tRNA modification | |
Ribosome biogenesis and assembly | |
Nucleobase, nucleoside, nucleotide, and nucleic acid metabolism | |
Glutamate biosynthesis | |
TGAAAA/TTTTCA | |
GAAAAA/TTTTTC | |
Cluster 2 | Cell growth and/or maintenance |
Mitotic cell cycle | |
Physiologic process | |
Nuclear organization and biogenesis | |
Organelle organization and biogenesis | |
Cytoplasm organization and biogenesis | |
Cytoskeleton organization and biogenesis | |
Morphogenesis | |
Reproduction | |
AAATTT/AAATTT | |
GAAAAA/TTTTTC | |
Cluster 3 | Ribosome biogenesis |
Cytoplasm organization and biogenesis | |
RNA metabolism | |
Aerobic respiration | |
Nucleobase, nucleoside, nucleotide, and nucleic acid metabolism | |
Cell growth and/or maintenance | |
AATTCA/TGAATT | |
Cluster 4 | Lipid metabolism |
Steroid metabolism | |
Amino acid biosynthesis | |
Glutamine family amino acid biosynthesis | |
Cell growth and/or maintenance | |
Arginine biosynthesis | |
ATAACA/TGTTAT | |
Cluster 5 | Cell growth and/or maintenance |
Protein modification | |
Protein amino acid phosphorylation | |
Organelle organisation and biogenesis | |
Cell wall organization and biogenesis | |
Cell organization and biogenesis | |
Signal transduction | |
Cytokinesis | |
Amino acid biosynthesis | |
Cluster 6 | DNA replication and chromosome cycle |
Cluster 7 | - |
Cluster 8 | Transport |
GAAAAA/TTTTTC | |
Cluster 9 | Steroid metabolism |
Alcohol metabolism | |
Ergosterol biosynthesis | |
Ammonium transport | |
Biological process unknown | |
Cluster 10 | Carboxylic acid metabolism |
Sporulation | |
Nitrogen utilization | |
Carnitine metabolism | |
Main pathways of carbohydrate metabolism | |
Energy pathways | |
Sporulation | |
Cluster 11 | RNA splicing |
mRNA metabolism | |
Regulation of transcription | |
Cluster 12 | Meiosis |
Meiotic prophase I | |
Nuclear division | |
Response to stimulus | |
AAGGGG/CCCCTT | |
Cluster 13 | Autophagy |
Vitamin metabolism | |
Fatty acid β-oxidation | |
Response to water | |
Biological process unknown | |
AAGGGG/CCCCTT | |
AGGGAG/CTCCCT | |
AAAAGG/CCTTTT | |
AAAGGG/CCCTTT | |
AGGGGG/CCCCCT |