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Table 5 Numbers of proteins matching SGD ORF annotation categories

From: Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas

ORF annotation SGD PeptideAtlas P > 0.9, Nobs > 0 PeptideAtlas P > 0.9, Nobs > 1
Uncharacterized 1,414 695 (49%) 405 (29%)
Verified 4,366 3,250 (74%) 2,449 (56%)
Verified | silenced gene 4 1 (25%) 0 (0%)
Dubious 820 95 (12%) 13 (2%)
Pseudogene 21 4 (19%) 1 (5%)
Transposable element gene 89 18 (20%) 13 (15%)
Total 6,714 4,063 (61%) 2,881 (43%)
  1. The percent of SGD ORFs seen in the PeptideAtlas are shown in columns 3 and 4. Column 3 uses all peptides with probabilities ≥ 0.9, while column 4 excludes peptides that have only been seen once in the S. cerevisiae PeptideAtlas.