TFBS motif* | NCS†| Known motif | Site‡ | Functional enrichment targets: GO Biological Process or Molecular Function§ |
---|---|---|---|---|
nrCAAnTC (a) | 5.77 | BJ_CAAT-box | TGCAAATCT | GO:0008152 metabolism 8.58E-04 (1.2); GO:0003824 catalytic activity 8.91E-05 (1.2) |
GTACAwry (b) | 5.64 | Â | Â | GO:0007275 development 2.89E-02 (1.6); GO:0003824 catalytic activity 2.98E-03 (1.2) |
TTCkwwTs | 5.79 | BOXIINTPATPB | ATAGAA | Â |
sGCrGAGA | 5.77 | Â | Â | GO:0015980 energy derivation by oxidation of organic compounds 4.82E-02 (2.7); GO:0008152 metabolism 1.43E-03 (1.2); GO:0003824 catalytic activity 2.89E-03 (1.1) |
kCCACGTn (4) | 17.54 | AT_G-box; HV_ABRE6; PH_boxII | GCCACGTGGA; GCCACGTACA; TCCACGTGGC | GO:0015979 photosynthesis 2.48E-04 (4.2); GO:0048316 seed development 2.64E-03 (3.6); GO:0009793 embryonic development (sensu Magnoliophyta) 6.15E-03 (3.5) |
yCATTTnT (c) | 8.7 | GM_Unnamed_6 | GCATTTTTATCA | GO:0003700 transcription factor activity 2.94E-03 (1.3); GO:0030528 transcription regulator activity 1.64E-02 (1.3); GO:0003677 DNA binding 3.86E-02 (1.2) |
ynTTATCC | 6.75 | SREATMSD; AT_I-box | TTATCC; CCTTATCCT | Â |
nGTTGACw (d) | 5.31 | ZM_O2-site | GTTGACGTGA | GO:0006952 defense response 2.99E-04 (1.9); GO:0009607 response to biotic stimulus 3.56E-04 (1.7); GO:0016301 kinase activity 7.52E-11 (1.7) |
TTTGCnrA | 6.13 | Â | Â | GO:0016773 phosphotransferase activity, alcohol group as acceptor 1.14E-02 (1.6); GO:0016772 transferase activity, transferring phosphorus-containing groups 2.60E-02 (1.5) |
rATyTGGG | 5.58 | Â | Â | Â |
TrTwTATA | 9.35 | AT_TATA-box | TATATAA | GO:0019748 secondary metabolism 2.76E-02 (2.1); GO:0006519 amino acid and derivative metabolism 1.35E-02 (1.8); GO:0003700 transcription factor activity 3.36E-02 (1.3) |
ATArwACA (e) | 5.79 | OS_Unnamed_2 | CCATGTCATATT | Â |
nTTCCCGC (5) | 27.27 | NT_E2Fa | TTTCCCGC | GO:0006261 DNA-dependent DNA replication 6.48E-04 (6.2); GO:0000067 DNA replication and chromosome cycle 1.06E-07 (5.5); GO:0006260 DNA replication 3.57E-05 (5.1) |
TkAGAwnA | 8.86 | BO_TCA-element3 | TCAGAAGAGG | GO:0006464 protein modification 4.52E-02 (1.7); GO:0003824 catalytic activity 5.20E-03 (1.1) |
AAACCCTA (13) (f) | 40.06 | TELOBOXATEEF1AA1 | AAACCCTAA | Ribosome biogenesis and assembly 9.86E-13 (4.4); ribosome biogenesis 5.67E-12 (4.3); pre-mRNA splicing factor activity 3.20E-04 (3.9) |
mGnyAAAG (g) | 6.38 | Â | Â | GO:0003824 catalytic activity 2.93E-02 (1.1) |
GAnCnkmG | 6.29 | Â | Â | GO:0003729 mRNA binding 1.00E-02 (3.1); GO:0003735 structural constituent of ribosome 3.69E-02 (1.7); GO:0006412 protein biosynthesis 3.15E-03 (1.7) |
TCnCTCTC | 8.98 | LE_5UTRPy-richstretch | TTTCTCTCTCTCTC | GO:0003777 microtubule motor activity 9.90E-03 (2.7); GO:0050789 regulation of biological process 2.27E-03 (1.4); GO:0016772 transferase activity, transferring phosphorus-containing groups 7.89E-03 (1.4) |
wmGTCmAm | 7.16 | Â | Â | GO:0003824 catalytic activity 4.51E-03 (1.1) |
ynCAACGG | 8.39 | CR_MSA-like | YCYAACGG YYA | GO:0003777 microtubule motor activity 3.17E-03 (3.4); GO:0003774 motor activity 8.55E-03 (2.9) |
nmGATyCr | 5.66 | Â | Â | GO:0006944 membrane fusion 2.32E-02 (4.5); GO:0003735 structural constituent of ribosome 2.77E-03 (1.9); GO:0005198 structural molecule activity 7.11E-04 (1.9) |
CGkCGmCn | 7.68 | OS_GC-motif5 | CGGCGCCCT | Â |
AGGCCCAw (9) | 21.94 | UP1ATMSD | GGCCCAWWW | GO:0007046 ribosome biogenesis 3.56E-14 (4.3); GO:0042254 ribosome biogenesis and assembly 2.28E-14 (4.3); GO:0003735 structural constituent of ribosome 8.66E-29 (3.3) |
AykyATwA | 6.09 | Â | Â | Â |
CTGnCTCy | 6.91 | Â | Â | GO:0016301 kinase activity 3.44E-02 (1.3); GO:0003676 nucleic acid binding 3.48E-02 (1.2); GO:0005488 binding 2.60E-03 (1.2) |
TsTCGnTT | 7.22 | Â | Â | GO:0003824 catalytic activity 5.10E-03 (1.1) |
TmAsTGAn | 7.76 | OS_GTCAdirectrepeat | TAAGTCATAACTGATGA | GO:0016491 oxidoreductase activity 3.85E-03 (1.5); GO:0008152 metabolism 5.74E-03 (1.2); GO:0003824 catalytic activity 5.70E-04 (1.2) |
yyACrCGT (2) | 6.56 | ST_G-box | TCACACGTGGC | GO:0009605 response to external stimulus 4.80E-02 (1.6); GO:0006950 response to stress 3.42E-02 (1.6) |
mATATTTT | 5.51 | GM_Nodule-site1 | GATATATTAATATTTTATTTTATA | Â |
CCAATnCm | 5.78 | CAATBOX1; HV_ATC-motif | CAAT; GCCAATCC | GO:0008152 metabolism 2.01E-02 (1.2) |
rkTCAwGm | 5.42 | Â | Â | GO:0003824 catalytic activity 6.17E-05 (1.2) |
ssCGCCnA (2) | 9.13 | E2F1OSPCNA | GCGGGAAA | GO:0000067 DNA replication and chromosome cycle 4.74E-02 (3.0); GO:0006259 DNA metabolism 2.15E-03 (2.3); GO:0007049 cell cycle 4.29E-02 (2.2) |
TTTATGnG | 7.1 | Â | Â | Â |
TCAwATAA | 6.74 | Â | Â | Â |