Table 3 Summary of the results for the miRNA target sites that are enriched in C2C12 myogenic differentiation (day 0 versus day 2) from DBSS
From: Unraveling transcriptional control and cis-regulatory codes using the software suite GeneACT
miRNA name | Sequence | Ratio | Regulated frequency | Control frequency |
|---|---|---|---|---|
One conserved site | Â | Â | Â | Â |
   miR-206 | UGGAAUGUAAGGAAGUGUGUGG | 4.075358 | 26 | 1 |
   miR-7 | UGGAAGACUAGUGAUUUUGUUG | 3.1348907 | 20 | 1 |
   miR-301 | CAGUGCAAUAGUAUUGUCAAAGC | 3.1348907 | 20 | 1 |
   miR-23a | AUCACAUUGCCAGGGAUUUCC | 2.8214017 | 18 | 1 |
   miR-138 | AGCUGGUGUUGUGAAUC | 2.8214017 | 18 | 1 |
   miR-211 | UUCCCUUUGUCAUCCUUCGCCU | 2.2727958 | 58 | 4 |
   miR-29c | UAGCACCAUUUGAAAUCGGU | 2.037679 | 13 | 1 |
   miR-133a | UUGGUCCCCUUCAACCAGCUGU | 1.9788998 | 101 | 8 |
   miR-194 | UGUAACAGCAACUCCAUGUGGA | 1.9593067 | 25 | 2 |
   miR-30c | UGUAAACAUCCUACACUCUCAGC | 1.8809344 | 12 | 1 |
   miR-130a | CAGUGCAAUGUUAAAAGGGCAU | -1 | 18 | 0 |
   miR-216 | UAAUCUCAGCUGGCAACUGUG | -1 | 12 | 0 |
   miR-196b | UAGGUAGUUUCCUGUUGUUGG | -1 | 10 | 0 |
   miR-140 | AGUGGUUUUACCCUAUGGUAG | -1 | 10 | 0 |
Two conserved sites | Â | Â | Â | Â |
   miR-324-5p | CGCAUCCCCUAGGGCAUUGGUGU | 2.5079126 | 32 | 2 |
   miR-193 | AACUGGCCUACAAAGUCCCAG | 2.037679 | 13 | 1 |
   miR-150 | UCUCCCAACCCUUGUACCAGUG | 2.037679 | 13 | 1 |
   miR-125b | UCCCUGAGACCCUAACUUGUGA | -1 | 18 | 0 |
   miR-133a | UUGGUCCCCUUCAACCAGCUGU | -1 | 17 | 0 |
   miR-152 | UCAGUGCAUGACAGAACUUGGG | -1 | 11 | 0 |
   miR-204 | UUCCCUUUGUCAUCCUAUGCCU | -1 | 9 | 0 |
   miR-17 | CAAAGUGCUUACAGUGCAGGUAGU | -1 | 8 | 0 |
   miR-211 | UUCCCUUUGUCAUCCUUCGCCU | -1 | 8 | 0 |
Three conserved sites | Â | Â | Â | Â |
   miR-296 | AGGGCCCCCCCUCAAUCCUGU | 2.037679 | 26 | 2 |
   miR-34a | UGGCAGUGUCUUAGCUGGUUGUU | -1 | 11 | 0 |
   miR-125a | UCCCUGAGACCCUUUAACCUGUG | -1 | 7 | 0 |
   miR-330 | GCAAAGCACACGGCCUGCAGAGA | -1 | 7 | 0 |
   miR-345 | UGCUGACUCCUAGUCCAGGGC | -1 | 6 | 0 |
   miR-320 | AAAAGCUGGGUUGAGAGGGCGAA | -1 | 6 | 0 |
   miR-125b | UCCCUGAGACCCUAACUUGUGA | -1 | 5 | 0 |
   miR-449 | UGGCAGUGUAUUGUUAGCUGGU | -1 | 5 | 0 |
   miR-150 | UCUCCCAACCCUUGUACCAGUG | -1 | 5 | 0 |
   miR-133a | UUGGUCCCCUUCAACCAGCUGU | -1 | 5 | 0 |
   miR-199a | CCCAGUGUUCAGACUACCUGUUC | -1 | 4 | 0 |
   miR-193 | AACUGGCCUACAAAGUCCCAG | -1 | 4 | 0 |
   miR-205 | UCCUUCAUUCCACCGGAGUCUG | -1 | 4 | 0 |