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Table 1 Numbers of 7TMpR candidates identified by various methods from the A. thaliana genome

From: Mining the Arabidopsis thaliana genome for highly-divergent seven transmembrane receptors

Methods

Number of 7TMpR candidates*

HMMTOP

 

   7TMs†

236 (201)

   6-8 TM†

633 (545)

   5-9 TMs†

1,091 (957)

   5-10 TMs†

1,343 (1,179)

SAM

16 (15)

LDA

3,211 (2,935)

QDA

2,006 (1,820)

LOG

2,626 (2,394)

KNN (K = 5)

3,125 (2,839)

KNN (K = 10)

3,202 (2,906)

KNN (K = 15)

3,298 (3,004)

KNN (K = 20)

3,347 (3,043)

SVM-AA

2,263 (2,043)

SVM-di

2,004 (1,807)

PLS-ACC

2,671 (2,466)

  1. *The numbers in parentheses show 7TMpR candidates after removing proteins derived from alternative splicing. †The numbers of TM regions predicted by HMMTOP.
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Genome Biology

ISSN: 1474-760X

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