Skip to main content

Table 5 Over-represented gene families or functional groups in Arabidopsis trans-NAT pairs

From: Prediction of trans-antisense transcripts in Arabidopsis thaliana

Rank N X P-adj GO attribute
1 43 167 <0.001 0008194: UDP-glycosyl transferase activity
2 197 2,634 <0.001 0016757: transferase activity
3 16 40 <0.001 0016168: chlorophyll binding
4 102 1,158 <0.001 0005515: protein binding
5 16 58 <0.001 0042546: cell wall biosynthesis
6 10 25 <0.001 0030076: light-harvesting complex
7 25 195 0.003 0006511: ubiquitin-dependent proteolysis
8 42 437 0.003 0006464: protein modification
9 53 611 0.003 0007165: signal transduction
10 392 7,058 0.006 0003824: catalytic activity
11 23 194 0.013 0009733: response to auxin stimulus
  1. N, number of transcripts from the same GO category involved in Arabidopsis trans-NAT pairs; P-adj, adjusted p value calculated by 1,000 null-hypothesis simulations using Fisher exact test; X, number of genes from the same GO category in Arabidopsis genome.