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Table 1 Human probes used in the study

From: Independent centromere formation in a capricious, gene-free domain of chromosome 13q21 in Old World monkeys and pigs

Code

BAC

Accession no.

Map

UCSC (May 2004)

Duplicons >20 kb (kb)

A1

RP11-631L24

BES

13q11

18,200,927-18,369,699

 

A

RP11-110K18

AL137119

13q12.11

19,404,213-19,546,706

 

B1

RP11-264J4

AL138688

13q12.11

19,546,607-19,674,400

20,660,153-20,838,143 (178 kb)

B

RP11-45B20

AL445985

13q12.12

23,305,109-23,483,639

23,779,363-24,076,626 (279 kb)

     

24,400,396-24,504,215 (104 kb)

C1

RP11-136G6

BES

13q12.2

27,400,228-27,581,446

 

C

RP11-64I8

AL158065

13q12.3

30,502,889-30,571,189

 

D

RP11-142E9

BES

13q13.2

33,252,754-33,451,136

34,390,618-34,605,903 (215 kb)

E

RP11-145J3

AL137878

13q14.11

42,340,023-42,427,380

40,186,105-40,396,852 (210 kb)

     

40,892,985-40,914,548 (21 kb)

     

41,919,710-41,988,111 (68 kb)

F

RP11-30N18

BES

13q14.12

44,481,780-44,541,540

 

F1

RP11-661C17

BES

13q14.13

45,660,985-45,826,015

 

G2

RP11-939G7

BES

13q14.13

45,754,269-45,939,953

45,879,285-45,940,396 (61 kb)

G1

RP11-945G11

BES

13q14.13

45,928,366-46,127,167

 

G

RP11-103J18

AL138875

13q14.2

48,711,312-48,801,118

51,634,782-52,115,918 (481 kb)

H

RP11-10O23

AC013618

13q21.1

55,430,662-55,603,003

56,611,299-56,645,585 (34 kb)

H1

RP11-543A19

AL590102

13q21.2

61,111,769-61,178,154

 

H2

RP11-1043D14

BES

13q21.31

61,282,357-61,458,258

 

H3

RP11-539I23

AL354803

13q21.31

61,530,165-61,709,544

 

H4

RP11-527N12

AL354810

13q21.31

62,520,878-62,699,203

 

H5

RP11-320N6

AL359208

13q21.31

62,804,903-62,944,551

 

H6

RP11-520F9

AL355879

13q21.32

63,407,676-63,481,486

63,188,927-63,316,389 (127 kb)

H7

RP11-318C5

AL356253

13q21.32

64,037,783-64,238,420

 

H8

RP11-379K8

AL354739

13q21.32

64,786,660-64,966,449

 

H9

RP11-612P16

BES

13q21.32

65,079,597-65,282,688

 

I

RP11-187E23

AL136999

13q21.32

66,092,979-66,264,337

 

NC ring

RP11-23B16

AL161894

13q21.33

67,841,134-67,947,116

 

NC invdup

RP11-209P2

AL162212

13q21.33

70,669,808-70,794,225

 
 

RP11-543G6

AL590141

13q21.33

70,794,126-70,797,735

 
 

RP11-512J14

AL354995

13q21.33

70,797,636-70,947,217

 

K

RP11-188A23

AL354831

13q22.3

77,153,157-77,297,742

 

K2

RP11-351H1

BES

13q31.1

84,396,772-84,582,561

 

L

RP11-143O10

AL353635

13q31.2

88,642,642-88,673,975

 

N

RP11-245B11

AL161774

13q34

113,770,458-113,932,864

91,231,475-92,135,792 (894 kb)

tel

   

114,142,980

111,979,464-112,007,994 (28 kb)

  1. Probes in bold were used to characterize all primate species. Probes in italics were used to define specific rearrangements. BES, BAC ends; NC, neocentromere.
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