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Table 4 Loci with well supported alternative 5' exons

From: Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases

Intron

Type

Count

MGI symbol

1

ME_exon

16

Abl1, Adck1, Brd4, Dusp14, Mark2, Pak1, Pdp1, Pkn3, Prkacb, Prkar1a, Ptp4a3, Ptprs, Raf1, Riok2, Sgk, Srpk2

 

Intronic

9

Acvrl1, Ccrk, Cdk9, Ntrk2, Pim3, Ppp4c, Prkcn, Prkwnk1

2

ME_exon

1

Sgk3

 

Intronic

1

Ptp4a2

3-4

ME_exon

6

Mast3, Limk2, Pak6, Pftk1, Pkn1, Prkcz

 

Intronic

0

 

5>

ME_exon

6

Dcamkl1, Lats2, Plk1, Ptprd, Tns1, Tns3, Ttn

 

Intronic

2

Mylk, Ptpro

  1. The Intron column refers to the intron where alternative transcript begins, and the Count column shows the number of loci in each class. Intronic, starts in intron runs into next exon; ME_exon, mutually exclusive first exons.
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Genome Biology

ISSN: 1474-760X

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