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Table 6 Example 3: SARS microarray

From: E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns

Taxonomy ID Virus profile Virus family Similarity score Probability
Iteration 1
   227859 SARS coronavirus Coronaviridae 0.415354 0.000001*
   219688 Mink astrovirus Astroviridae 0.335302 0.000000*
   70793 Turkey astrovirus Astroviridae 0.217455 0.000000*
   11120 Avian infectious bronchitis virus Coronaviridae 0.175788 0.000004*
   70794 Ovine astrovirus Astroviridae 0.153207 0.000031*
   107033 Avian nephritis virus Astroviridae 0.057325 0.000020*
   47001 Equine rhinitis B virus Picornaviridae 0.048009 0.000054*
   12702 Human astrovirus Astroviridae 0.044928 0.002118*
   11852 Simian type D virus 1 Retroviridae 0.034479 0.016202
   31631 Human coronavirus OC43 Coronaviridae 0.029834 0.002178
Iteration 2
   11852 Simian type D virus 1 Retroviridae 0.053705 0.007108*
   39068 Mason-Pfizer monkey virus Retroviridae 0.031347 0.026931
   10359 Human herpesvirus 5 Herpesviridae 0.024634 0.167435
   147712 Human rhinovirus B Picornaviridae 0.022551 0.048232
   208177 Tomato leaf curl Vietnam virus Geminiviridae 0.022090 0.149573
   85752 Tomato yellow leaf curl Thailand virus Geminiviridae 0.021844 0.080110
   223334 Tobacco leaf curl Kochi virus Geminiviridae 0.021469 0.108687
   188763 Chimpanzee cytomegalovirus Herpesviridae 0.021088 0.132918
   32610 Tomato geminivirus Geminiviridae 0.021055 0.081960
   83839 Pepper leaf curl virus Geminiviridae 0.020882 0.082562
  1. For each iteration, ten profiles with highest similarity scores are shown sorted by score. *Statistically significant probabilities (P < 0.01). SARS, severe acute respiratory syndrome.