E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns

Table 6 Example 3: SARS microarray

Taxonomy ID	Virus profile	Virus family	Similarity score	Probability
Iteration 1
227859	SARS coronavirus	Coronaviridae	0.415354	0.000001*
219688	Mink astrovirus	Astroviridae	0.335302	0.000000*
70793	Turkey astrovirus	Astroviridae	0.217455	0.000000*
11120	Avian infectious bronchitis virus	Coronaviridae	0.175788	0.000004*
70794	Ovine astrovirus	Astroviridae	0.153207	0.000031*
107033	Avian nephritis virus	Astroviridae	0.057325	0.000020*
47001	Equine rhinitis B virus	Picornaviridae	0.048009	0.000054*
12702	Human astrovirus	Astroviridae	0.044928	0.002118*
11852	Simian type D virus 1	Retroviridae	0.034479	0.016202
31631	Human coronavirus OC43	Coronaviridae	0.029834	0.002178
Iteration 2
11852	Simian type D virus 1	Retroviridae	0.053705	0.007108*
39068	Mason-Pfizer monkey virus	Retroviridae	0.031347	0.026931
10359	Human herpesvirus 5	Herpesviridae	0.024634	0.167435
147712	Human rhinovirus B	Picornaviridae	0.022551	0.048232
208177	Tomato leaf curl Vietnam virus	Geminiviridae	0.022090	0.149573
85752	Tomato yellow leaf curl Thailand virus	Geminiviridae	0.021844	0.080110
223334	Tobacco leaf curl Kochi virus	Geminiviridae	0.021469	0.108687
188763	Chimpanzee cytomegalovirus	Herpesviridae	0.021088	0.132918
32610	Tomato geminivirus	Geminiviridae	0.021055	0.081960
83839	Pepper leaf curl virus	Geminiviridae	0.020882	0.082562

For each iteration, ten profiles with highest similarity scores are shown sorted by score. *Statistically significant probabilities (P < 0.01). SARS, severe acute respiratory syndrome.

ISSN: 1474-760X