Table 2 Summary of identified ncRNA genes in Prochlorococcus MED4 and their orthologues in three related strains of marine cyanobacteria
From: Identification of cyanobacterial non-coding RNAs by comparative genome analysis
Strain | RNA gene name | CLID | Coordinates of RNA gene | Length of RNA in nucleotides | Adjacent protein-coding genes | Orientation |
|---|---|---|---|---|---|---|
MED4 | yfr1 | 257 | Complement (1000744..1000797) | 54 | trxA and guaB | ← ← ← |
yfr2 | 194 | 346828..346921 | 94 | PMM0363 and PMM0364 | → → → | |
yfr3 | 194 | 654511..654604 | 95 | PMM0686 and PMM0687 | → → ← | |
yfr4 | 194 | 383389..383483 | 94 | PMM0404 and phdC | ← → → | |
yfr5 | NP | Complement (972088..972176) | 89 | PMM1027 and PMM1028 | → ← → | |
yfr6 | 53 | Complement (627729..627972 | 244 | PMM0659 and PMM0660 | → ← ← | |
yfr7 | 51 | 652625..652844 | 220 | purK and PMM0684 | → → → | |
SS120 | yfr2 | 84 | Complement (556612..556701) | 90 | rpsU and Pro0591 | ← ← ← |
yfr6 | 53 | Complement (923780..924018) | 239 | Pro1007 and purK | → ← ← | |
yfr7 | 51 | Complement (924466..924640) | 175 | Pro1007 and purK | → ← ← | |
MIT 9313 | yfr1 | 257 | 1220973..1221029 | 57 | guaB and trxA | → → → |
yfr2 | NP | Complement (1667304..1667390) | 87 | PMT1567 and PMT1568 | → ← ← | |
yfr7 | NP | 727045..727219 (complementary to PMT0670) | 175 | purK and PMT0671 | → → ← | |
WH 8102 | yfr1 | 257 | Complement (706826..706881) | 56 | trxA and guaB | ← ← ← |
yfr2 | NP | 1127972..1128056 | NT | Overlapping SYNW1139 | ||
yfr3 | NP | 1131773..1131856 | NT | SYNW1140 and SYNW1141 | → → ← | |
yfr7 | NP | Complement (1302885..1303058) (complementary to SYNW1307) | 174 | SYNW1306 and purK | → ← ← |