Table 3 Useful websites for phosphoproteomics

Phosphorylation-site databases

Phosphosite

Searchable by protein name to look for known phosphorylation sites

http://www.phosphosite.org

[41]

Swiss-Prot

Protein annotations include sites of phosphorylation and other post-translational modifications

http://us.expasy.org/sprot

[43]

Phospho.ELM

Searchable by protein name, kinase substrates, or SH2-binding sites

http://phospho.elm.eu.org

[44]

Phosphorylation-site prediction

Scansite

Scans for kinase motifs derived from peptide library phosphorylation data

http://scansite.mit.edu

[59]

NetPhosK

Produces neural network predictions of specific kinase phosphorylation sites

http://www.cbs.dtu.dk/services/NetPhosK

[60]

ProSite

Scans for kinase consensus motifs derived from the literature. A limited number of kinase motifs are included

http://us.expasy.org/prosite

[61]