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Table 2 Top 50 cDNA clones identified by anti-HSF ChIP on cDNA arrays

From: Genomic analysis of heat-shock factor targets in Drosophila

FlyBase gene

Mean ratio

p-value

Gene chip

cDNA

DAM GAGA

GAGA p-value

HSF sites

Cytology

CG32041

3.043

2.02E-05

-

15

1.305

1.25E-05

5

67B1

CG1416

2.793

2.19E-04

-

2.4

-0.024

8.44E-01

1

40A2

CG9705

2.674

4.91E-05

-

1.5

0.118

4.86E-01

8

73C4

CG3428

2.428

6.53E-05

-

2.1

-0.086

4.76E-01

3

67B8

DnaJ-1

2.375

5.25E-04

6.13

4.4

0.489

4.23E-03

1

64E5

FKBP59

2.321

3.88E-04

-

2.4

-0.047

6.19E-01

1

30E1

CG1553

2.179

3.11E-05

-

2.4

0.368

1.47E-02

2

43E17

Hsc70Cb

2.164

2.90E-04

-

2.5

0.189

2.89E-01

1

70C15

Taf7

2.128

3.06E-06

-

1.2

0.462

5.95E-03

1

84E5

CG10286

2.128

6.95E-06

-

1.2

0.226

1.01E-01

5

83E4

CG2182

2.080

1.85E-05

-

1.1

0.188

1.26E-01

5

83B8

MESR6

2.079

9.11E-06

-

1.6

0.104

3.14E-01

4

75F7

Fer1HCH

1.986

4.23E-05

-1.09

0

1.793

6.62E-06

6

99F2

CG8258

1.962

3.83E-05

-

1.4

0.215

1.32E-01

4

44F5

CG11455

1.954

1.47E-03

-

0

0.100

5.55E-01

4

21B1

EP2237

1.928

3.25E-04

-

1.4

0.258

4.45E-02

0

21D6

alphaCop

1.926

4.35E-04

-

-0.7

0.820

5.90E-01

5

62A9

Trap36

1.919

1.58E-04

-

-2

-0.208

7.55E-02

2

65F2

Sir2

1.917

1.16E-04

-

1.4

0.280

4.32E-02

9

34A7

CG11791

1.906

5.08E-06

-

1.3

0.490

4.34E-03

3

96B19

CG32649

1.836

7.90E-04

-

2

0.064

5.98E-01

5

11D1

l(1)G0331

1.833

1.13E-04

-

1.3

0.143

1.77E-01

3

7B1

Cyp1

1.805

9.67E-05

-1.13

0

0.109

3.59E-01

1

14B12

RNaseX25

1.803

6.23E-05

-

1.1

-0.310

1.87E-02

2

66A21

l(2)08717

1.794

7.56E-04

-

0

1.624

1.49E-07

2

55F3

CG10576

1.724

2.14E-04

-

1.3

-0.329

4.11E-03

6

64E6

Xbp1

1.710

2.23E-04

-

1.5

0.108

3.20E-01

6

57C3

Pgi

1.708

1.65E-03

2.01

1.4

-0.011

9.08E-01

2

44F6

Hsc70-5

1.686

1.76E-04

1.44

2

0.019

8.58E-01

3

50E6

sgl

1.667

1.74E-07

1.84

1.6

0.172

2.51E-01

0

64D4

Hsp23

1.665

7.44E-04

10.11

21

0.786

2.56E-04

14

67B1

Arf79F

1.651

7.42E-04

1.08

0

0.277

7.76E-02

2

80B2

CG8297

1.623

1.95E-03

-

1.9

-0.208

1.77E-01

5

52D2

dmt

1.623

1.39E-03

-

1.2

-0.175

1.19E-01

2

85E5

l(1)G0022

1.591

1.16E-03

-

1.2

-0.110

3.57E-01

3

13E14

CG7945

1.581

9.89E-05

-

-2.6

0.034

7.40E-01

5

71D4

CG31536

1.579

1.06E-04

-

0

-0.045

7.04E-01

1

82E2

Hsp27

1.568

6.82E-04

12.42

32

1.001

4.92E-05

9

67B1

Lrr47

1.560

9.19E-04

-

1.1

-0.252

1.77E-02

1

50E6

CG1103

1.551

7.79E-04

-

-1.1

-0.310

1.16E-02

5

82A4

CG10600

1.539

9.21E-05

-

1.2

-0.145

1.51E-01

5

37B1

CG10973

1.532

7.99E-03

-

2

-0.148

1.52E-01

4

69E1

CG12744

1.496

5.10E-03

-

0

0.693

2.52E-03

3

46C1

sra

1.476

1.79E-04

-

2.2

-0.110

3.25E-01

6

89B12

Rpn6

1.469

8.39E-05

-

1.4

-0.237

4.20E-02

3

51C1-2

CG3488

1.466

8.40E-04

3.2

1.3

-0.023

9.13E-01

3

23D4

sktl

1.462

2.79E-03

1.14

1.1

-0.090

4.45E-01

5

57B3

Actr13E

1.447

1.04E-03

-1.27

-1.1

-0.288

2.35E-02

6

13E12

CG17294

1.447

1.81E-03

-

1.4

-0.241

2.30E-02

7

29B3

CG33111

1.426

1.27E-04

-

0

NA

NA

9

95B7

  1. The FlyBase gene symbol, corresponding to the cDNA clone on the array, is given along with the mean asinh ratio and p-values derived from Cyber-T. Expression data is given from custom Affymetrix GeneChips and from the cDNA arrays with RNA extracted from heat-shocked embryos; bold indicates significant expression (p better than 10-3). The mean ratios and p-values from a GAGA-factor DamID experiment are listed for each gene; bold indicates significant ratios. Hsf sites indicates the number of predicted Hsf sites found 1 kb upstream of each gene and the column heading cytology indicates the predicted cytological location; matches with the polytene chromosome studies are in bold. See text for details. The full list of 188 genes with associated data is given in Additional data file 3.