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Table 2 Top 50 cDNA clones identified by anti-HSF ChIP on cDNA arrays

From: Genomic analysis of heat-shock factor targets in Drosophila

FlyBase gene Mean ratio p-value Gene chip cDNA DAM GAGA GAGA p-value HSF sites Cytology
CG32041 3.043 2.02E-05 - 15 1.305 1.25E-05 5 67B1
CG1416 2.793 2.19E-04 - 2.4 -0.024 8.44E-01 1 40A2
CG9705 2.674 4.91E-05 - 1.5 0.118 4.86E-01 8 73C4
CG3428 2.428 6.53E-05 - 2.1 -0.086 4.76E-01 3 67B8
DnaJ-1 2.375 5.25E-04 6.13 4.4 0.489 4.23E-03 1 64E5
FKBP59 2.321 3.88E-04 - 2.4 -0.047 6.19E-01 1 30E1
CG1553 2.179 3.11E-05 - 2.4 0.368 1.47E-02 2 43E17
Hsc70Cb 2.164 2.90E-04 - 2.5 0.189 2.89E-01 1 70C15
Taf7 2.128 3.06E-06 - 1.2 0.462 5.95E-03 1 84E5
CG10286 2.128 6.95E-06 - 1.2 0.226 1.01E-01 5 83E4
CG2182 2.080 1.85E-05 - 1.1 0.188 1.26E-01 5 83B8
MESR6 2.079 9.11E-06 - 1.6 0.104 3.14E-01 4 75F7
Fer1HCH 1.986 4.23E-05 -1.09 0 1.793 6.62E-06 6 99F2
CG8258 1.962 3.83E-05 - 1.4 0.215 1.32E-01 4 44F5
CG11455 1.954 1.47E-03 - 0 0.100 5.55E-01 4 21B1
EP2237 1.928 3.25E-04 - 1.4 0.258 4.45E-02 0 21D6
alphaCop 1.926 4.35E-04 - -0.7 0.820 5.90E-01 5 62A9
Trap36 1.919 1.58E-04 - -2 -0.208 7.55E-02 2 65F2
Sir2 1.917 1.16E-04 - 1.4 0.280 4.32E-02 9 34A7
CG11791 1.906 5.08E-06 - 1.3 0.490 4.34E-03 3 96B19
CG32649 1.836 7.90E-04 - 2 0.064 5.98E-01 5 11D1
l(1)G0331 1.833 1.13E-04 - 1.3 0.143 1.77E-01 3 7B1
Cyp1 1.805 9.67E-05 -1.13 0 0.109 3.59E-01 1 14B12
RNaseX25 1.803 6.23E-05 - 1.1 -0.310 1.87E-02 2 66A21
l(2)08717 1.794 7.56E-04 - 0 1.624 1.49E-07 2 55F3
CG10576 1.724 2.14E-04 - 1.3 -0.329 4.11E-03 6 64E6
Xbp1 1.710 2.23E-04 - 1.5 0.108 3.20E-01 6 57C3
Pgi 1.708 1.65E-03 2.01 1.4 -0.011 9.08E-01 2 44F6
Hsc70-5 1.686 1.76E-04 1.44 2 0.019 8.58E-01 3 50E6
sgl 1.667 1.74E-07 1.84 1.6 0.172 2.51E-01 0 64D4
Hsp23 1.665 7.44E-04 10.11 21 0.786 2.56E-04 14 67B1
Arf79F 1.651 7.42E-04 1.08 0 0.277 7.76E-02 2 80B2
CG8297 1.623 1.95E-03 - 1.9 -0.208 1.77E-01 5 52D2
dmt 1.623 1.39E-03 - 1.2 -0.175 1.19E-01 2 85E5
l(1)G0022 1.591 1.16E-03 - 1.2 -0.110 3.57E-01 3 13E14
CG7945 1.581 9.89E-05 - -2.6 0.034 7.40E-01 5 71D4
CG31536 1.579 1.06E-04 - 0 -0.045 7.04E-01 1 82E2
Hsp27 1.568 6.82E-04 12.42 32 1.001 4.92E-05 9 67B1
Lrr47 1.560 9.19E-04 - 1.1 -0.252 1.77E-02 1 50E6
CG1103 1.551 7.79E-04 - -1.1 -0.310 1.16E-02 5 82A4
CG10600 1.539 9.21E-05 - 1.2 -0.145 1.51E-01 5 37B1
CG10973 1.532 7.99E-03 - 2 -0.148 1.52E-01 4 69E1
CG12744 1.496 5.10E-03 - 0 0.693 2.52E-03 3 46C1
sra 1.476 1.79E-04 - 2.2 -0.110 3.25E-01 6 89B12
Rpn6 1.469 8.39E-05 - 1.4 -0.237 4.20E-02 3 51C1-2
CG3488 1.466 8.40E-04 3.2 1.3 -0.023 9.13E-01 3 23D4
sktl 1.462 2.79E-03 1.14 1.1 -0.090 4.45E-01 5 57B3
Actr13E 1.447 1.04E-03 -1.27 -1.1 -0.288 2.35E-02 6 13E12
CG17294 1.447 1.81E-03 - 1.4 -0.241 2.30E-02 7 29B3
CG33111 1.426 1.27E-04 - 0 NA NA 9 95B7
  1. The FlyBase gene symbol, corresponding to the cDNA clone on the array, is given along with the mean asinh ratio and p-values derived from Cyber-T. Expression data is given from custom Affymetrix GeneChips and from the cDNA arrays with RNA extracted from heat-shocked embryos; bold indicates significant expression (p better than 10-3). The mean ratios and p-values from a GAGA-factor DamID experiment are listed for each gene; bold indicates significant ratios. Hsf sites indicates the number of predicted Hsf sites found 1 kb upstream of each gene and the column heading cytology indicates the predicted cytological location; matches with the polytene chromosome studies are in bold. See text for details. The full list of 188 genes with associated data is given in Additional data file 3.