From: Transcript copy number estimation using a mouse whole-genome oligonucleotide microarray
Gene symbol | Forward/reverse qPCR oligo sequence | Optimal concentration | Amplicon | Intron spanned? | |
---|---|---|---|---|---|
 |  |  | Size | Tm |  |
Ank | 5'-AGTACCATAGTACACTCGGTTACCTGTCCTG-3' | 900 nM | 114 bp | 78.8°C | Yes |
 | 5'-GCAAAGCTTTAAGTCGTAATCTAGCATCC-3' | 50 nM |  |  |  |
Axl/Ufo | 5'-CGACTACCTGCGTCAAGGAAATCG-3' | 300 nM | 112 bp | 82.8°C | Yes |
 | 5'-AAAACTTGGCCGGTCTCGAGG-3' | 300 nM |  |  |  |
Cd34 | 5'-TGCTCTGGAATCCGAGAAGTGAGG-3' | 300 nM | 140 bp | 78.0°C | Yes |
 | 5'-TCAGCCTCAGCCTCCTCCTTTTC-3' | 300 nM |  |  |  |
Dnchc1 | 5'-AACTAAACCCAGCCATTCGGCC-3' | 300 nM | 98 bp | 84.3°C | No |
 | 5'-TTGCGTTGGCGGGTGACAG-3' | 900 nM |  |  |  |
Gap43 | 5'-GAGAAGGGAAGGAGAGAAGGCAGG-3' | 900 nM | 131 bp | 79.5°C | Yes |
 | 5'-TCCGGCTTGACACCATCTTGTTC-3' | 900 nM |  |  |  |
Gapd | 5'-CGGAGTCAACGGATTTGGTCGTAT-3' | 900 nM | 214 bp | 82.6°C | Yes |
 | 5'-GAAGATGGTGATGGGCTTCC-3' | 300 nM |  |  |  |
H19 | 5'-AGCTAACACTTCTCTGCTGCTCTCTGG-3' | 300 nM | 144 bp | 81.4°C | Yes |
 | 5'-ATCTTCTTGATTCAGAACGAGACGGAC-3' | 900 nM |  |  |  |
Hand1 | 5'-GAGATGTATACCTGAGAGCAACAGGCATGATAGGTAG-3' | 300 nM | 113 bp | 75.1°C | No |
 | 5'-CTTCTCCTTCATTTCTTTCCTTTTCCTTC-3' | 900 nM |  |  |  |
Hif1a | 5'-GTCAGCAGTACATGGTAGCCACAATTG-3' | 900 nM | 139 bp | 74.4°C | No |
 | 5'-GATCCAGGCTTAACAATTCCATAGGC-3' | 300 nM |  |  |  |
Hmga1 | 5'-AATTCAGGAGGATGAACATCTGACGC-3' | 900 nM | 114 bp | 77.3°C | No |
 | 5'-TCTGTTCACAAACTACCTCTGGACGG-3' | 50 nM |  |  |  |
Hprt1 | 5'-AACAATGCAAACTTTGCTTTCCCTG-3' | 300 nM | 123 bp | 80.1°C | Yes |
 | 5'-TCAAATCCAACAAAGTCTGGCCTG-3' | 300 nM |  |  |  |
Igf2bp3 | 5'-AAGTATACATTCTCACAGAGACAGGATCGAGTGACTG-3' | 900 nM | 126 bp | 81.5°C | No |
 | 5'-AAAGACAGATTTGCTTAACCAACAGACG-3' | 900 nM |  |  |  |
Lpl | 5'-TTTCCAGCCAGGATGCAACATTG-3' | 300 nM | 105 bp | 82.3°C | No |
 | 5'-TGAATGGAGCGCTCATGCGAG-3' | 900 nM |  |  |  |
Myo1b | 5'-AATACACACCTTGTACCAATCAGCTCTCTC-3' | 900 nM | 143 bp | 76.1°C | No |
 | 5'-TGATAAGAAGAGGCTGAGAGCCGTTC-3' | 900 nM |  |  |  |