Skip to main content

Table 5 Interspecies substitution rates

From: Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human

Gene

Alignment length

Number of reads

Frequency per kilobase

  

M f.

M.m.

M.n.

m vs n*

m vs f*

n vs f*

ADH1B

819

8

5

14

0.00

0.00

2.44

AFP

537

1

3

1

11.17

7.45

3.72

ALB

2047

> 20

> 20

> 20

0.00

0.49

0.49

AMBP

731

1

5

4

4.10

1.37

5.47

ANGPTL3

371

1

1

2

2.70

0.00

2.70

APOA1

746

10

76

2

10.72

4.02

5.36

APOA2

431

3

4

5

6.96

4.64

2.32

APOC4

312

3

1

1

16.03

12.82

16.03

APOE

217

2

2

2

4.61

4.61

0.00

APOH

1007

4

14

14

2.98

0.00

2.98

B2M

587

1

90

1

0.00

11.93

11.93

EEF1A1

920

7

>20

7

0.00

0.00

0.00

FGA

379

3

6

1

7.92

0.00

7.92

FGB

407

3

43

11

2.46

0.00

2.46

FGG

694

3

24

9

1.44

1.44

2.88

HPR

567

2

20

12

3.53

1.76

1.76

RPL9

680

1

35

1

4.41

4.41

0.00

SERPINC1

787

1

3

1

1.27

2.54

1.27

TTR

599

5

2

6

5.01

3.34

5.01

UBC

460

1

40

1

0.00

0.00

0.00

UGT2B7

228

1

13

1

8.77

0.00

8.77

    

Mean

5.88

3.80

5.22

    

Median

3.53

1.44

2.70

    

SD

4.38

3.80

4.19

  1. *Pair wise interspecies substitution frequencies computed on a gene-by-gene basis M.f., Macaca fascicularis; M.m., M. mulatta; M.n., M. nemestrina.