Single-feature polymorphism discovery in the barley transcriptome

Table 2 Single feature polymorphism (SFP) comparison with sequence-characterized SNPs

The categories for SFP calls from RNA data are shown in columns: mxSFP, SFP in Morex; nonSFP, no SFP at the 0.1% FDR; gpSFP, SFP in Golden Promise. The categories of sequence-characterized probes are in rows: MX, polymorphism in Morex; non-polymorphic, no polymorphism between probe and any of the two genotypes; GP, polymorphism in Golden Promise. Intersections of the columns and rows indicate different combinations of sequence-verified polymorphisms and SFP.

ISSN: 1474-760X