From: Single-feature polymorphism discovery in the barley transcriptome

RNA hybridization: 17 Golden Promise 19 Morex, 6 tissues; SAM analysis for the two-class unpaired case assuming unequal variances; s0 = 0.0342 (the 5% quantile of the s values); number of permutations, 500. Mean number of falsely called genes is computed. | Delta | p0 | Called | False | FDR |

0.5 | 0.95 | 27,159 | 5,884 | 0.206 | |

1.0 | 0.95 | 17,744 | 594 | 0.032 | |

1.5 | 0.95 | 13,285 | 65 | 0.005 | |

2.0 | 0.95 | 10,504 | 7 | 0.001 | |

2.5 | 0.95 | 8,583 | 0 | 0.000 | |

Genomic DNA hybridization three replicates three genotypes; SAM analysis for the multi-class case with three classes; s0 = 0.0123 (the 25 % quantile of the s values); number of permutations: 100; mean number of falsely called genes is computed. | Delta | p0 | Called | False | FDR |

1 | 0.95 | 4,017 | 2,073 | 0.47 | |

2 | 0.95 | 1,728 | 583 | 0.31 | |

3 | 0.95 | 1,090 | 258 | 0.22 | |

4 | 0.95 | 789 | 139 | 0.16 | |

5 | 0.95 | 631 | 86 | 0.13 |