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Figure 3 | Genome Biology

Figure 3

From: Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture

Figure 3

Cloning and sequence analysis of japonica chromosome 10 UG models and intergenic TARs. (a) Summary of RT-PCR analysis of selected UG models. ORF identical, annotated ORF is the same as determined from the cloned sequence; ORF different, annotated ORF is different from that in the cloned sequence. (b) Summary of RT-PCR analysis of selected intergenic TARs. Gene model, cloned TARs overlapping with TIGR models; BGF prediction, cloned TARs overlapping with BGF predictions; unique, cloned TARs not overlapping with any annotated feature. (c) Representative UG models whose cloned sequences either differ from (OsJN02936) or are the same as (OsJN03072) the annotated ones. (d) Representative intergenic TARs whose cloned sequences either overlap with a TIGR model (OsJN01855) or are completely intergenic (C10_ZN376). Representation of microarray data in this figure is the same as in Figure 2 except that the oligo index is omitted.

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