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Figure 2 | Genome Biology

Figure 2

From: Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture

Figure 2

Tiling microarray analysis of the rice chromosome 10 transcriptome. (a) Schematic representation of rice chromosome 10. The purple oval denotes the centromere. (b) A region from the long arm of chromosome 10 displaying the three sets of gene models used: BGI indica; TIGR japonica and BGI japonica. The nonredundant protein-coding gene models are aligned to the chromosomal sequences and color-coded on the basis of their classification (see text). (c) Detailed tiling profile of one representative CG model. The model is represented here as block arrows, which point in the direction of transcription. Signal oligos are aligned according to their chromosomal coordinates. The fluorescence intensity value of each signal oligo, capped at 2,500, is depicted as a vertical bar. The shade of the bar represents the oligo index score (see Materials and methods). The red blocks underneath the bars indicate the presence of an interrogating oligo in the microarray.

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