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Table 1 Six subclasses of part-whole relationships

From: The Sequence Ontology: a tool for the unification of genome annotations

Part_of subtype

Whole

Properties of relationship

Example

component_part_of

integral object

Functional/heteromerous/separable

A leg is a part_of a body.

A regulatory_region is a part_of a gene.

portion_part_of

mass

Not functional/homomerous/separable

A slice is a part_of a cake.

A restriction_fragment is part_of a chromosome.

stuff_part_of

object

Not functional/heteromerous/not separable

Carbon is a part_of a chromosome.

member_part_of

collection

Not functional/heteromerous/separable

A sheep is a part_of a flock.

A read is a part_of a contig.

place_part_of

area

Not functional/homomerous/not separable

England is a part_of Britain.

feature_part_of

activity

Functional/heteromerous/not separable

Inhaling is a part_of breathing.

Translation is part_of protein synthesis.

  1. Column 1 gives the name of the subclass; column 2, the class or 'whole' to which such parts belong; column 3, the essential properties that define that particular part-whole relationship; and column 4 provides examples. Of the six classes only two - component_part_of and member_part_of occur in SO.